Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4564 ATGAAAACAACATACATGGACCCGCTAAGTTGCTCTGTAGAGGCTGCCAATACATGCACTGCCTCACTCTACCACATAACTCATGATGATTACAGCCTTGAAGAAATTGCATTTTATTACTCTGTTAACTCTTCACAAATCAAGCCTATTAAGTATGGAACAAGGCAAGATTACCTCATAACAGTTCCTTGTTCTTGCAAGAACACACAAAACCTCAGCGGGTATTTCTATCATACAACCTACAAAAATGTGAAGCATGGGGACATCTTTGTGGACATATCAGCTTCTGTTTACAGTGGACAAGCCATGCTGATCACCCAAAGTTTAATTCCAGGCAAAGATCTAGAAATAGACATTCCATGTGGGTGTTCCGAGGATGAGGGTCAAAGGGTTGTCACATATACAGTGCAGCAGAATGATACACCAGAAACAATTTCCCTTTTGCTTAATGCTACCCTGCCTGCCTTGCTGAGAATGAACAAGATTCTAGCTCAGAAACCTGGTTTCATAGATATTGGTTGGGTGCTCTTTGTTCCTTTGGAATTGAATGGGGTTCATGGGGTTCCTCCACAACCCACAGAAAAAACGAAACGGAACTGGCCAATGATAGTTGGTATCGTCGTGGGAGTGCTGTTACTTTCAGTTATCATTATCACCATTCTCATAATTCTTTGGAGAAGGAGAGTCCATCAAATCACCAGAAATGATTCCACAGTTGTCTCTAAAAGATCATTTGTCAACAGAAATATTACCTTGCATAACTCCACCCTTTACAAAGAATATATGGGAGATGTAATGCAAATTGAATCAGAGAGGCCAGTGATATATGGTCTTGAGGAGATAGAAGAGGCTACAAATAACTTTGATGAAGCTCGAAAAATCGGAGTTGGCGGGTATGGGAGTGTTTATTTTGGAATCTTAGAGCAGAAGGAGGTTGCTGTGAAAAAGATGAGGTCTAATAAGACTAAGGAATTCTATGCGGAACTCAAGGCCTTGTGTAAGATCCATCATATCAACATTGTGGAGCTATTAGGATATGCCAGAGGAGAAGATCACCTCTATTTGGTGTATGAGTATGTTTCAAATGGATCTCTCAGTGAACATATTCATGATCCATTAGAGCAAGGGCACCAACCTCTTTCTTGGAATGCAAGGGTTCAGATTGCACTCGATGCAGCAAGAGGTATTGAATACATACATGATCATACAAAAGCTCGATATGTGCATCGCGACATAAAGACTAGCAATATTCTCATTGATGAGAAGCTCAGAGCTAAGGTAGCAGATTTTGGACTTGCAATGCTGGTGGACAGAAGCAATGATGAAAATTTCATAGCAACAAGGCTTGTTGGAACACCAGGATACCTTCCACCCGAATCTGTGAAGGAGCTTCAGGTGACCCCAAAAACCGATGTGTTTGCATTTGGAGTGGTTCTAGCAGAACTGATAACAGGGAAACGTGCACTGTTTCGGGACAAGAACGAAGAAGGCACCAAAATGAAATCACTTATTTCACTTGTACATCAAATATTCCAAGATGCAGAGCCAGAGAATGGTCTAGAAGATGTGATAGATAAGAACCTTGAAGCAAACTATCCCATTGAATACGTGTTGAAGGTAGCAGAGATAGCAGGTCGGTGCTTGCAAGAAGATCCAGTAGAAAGGCCTGAAATGAGGGACTTGGTTGGAGCACTGTCACAGATAGTGATGAACTCCATAGAATGGGAAGCATCCCTTGGTGGAAACAGCCAAGTCTTCAGTGGTGTCTTTACTGGAAGATGA 1782 0.4169 MKTTYMDPLSCSVEAANTCTASLYHITHDDYSLEEIAFYYSVNSSQIKPIKYGTRQDYLITVPCSCKNTQNLSGYFYHTTYKNVKHGDIFVDISASVYSGQAMLITQSLIPGKDLEIDIPCGCSEDEGQRVVTYTVQQNDTPETISLLLNATLPALLRMNKILAQKPGFIDIGWVLFVPLELNGVHGVPPQPTEKTKRNWPMIVGIVVGVLLLSVIIITILIILWRRRVHQITRNDSTVVSKRSFVNRNITLHNSTLYKEYMGDVMQIESERPVIYGLEEIEEATNNFDEARKIGVGGYGSVYFGILEQKEVAVKKMRSNKTKEFYAELKALCKIHHINIVELLGYARGEDHLYLVYEYVSNGSLSEHIHDPLEQGHQPLSWNARVQIALDAARGIEYIHDHTKARYVHRDIKTSNILIDEKLRAKVADFGLAMLVDRSNDENFIATRLVGTPGYLPPESVKELQVTPKTDVFAFGVVLAELITGKRALFRDKNEEGTKMKSLISLVHQIFQDAEPENGLEDVIDKNLEANYPIEYVLKVAEIAGRCLQEDPVERPEMRDLVGALSQIVMNSIEWEASLGGNSQVFSGVFTGR* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4564 593 ProSiteProfiles LysM domain profile. 132 178 IPR018392 -
Amo13g4564 593 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Amo13g4564 593 Gene3D Transferase(Phosphotransferase) domain 1 360 579 - -
Amo13g4564 593 Pfam Protein kinase domain 289 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4564 593 Pfam LysM domain 134 179 IPR018392 -
Amo13g4564 593 SUPERFAMILY Protein kinase-like (PK-like) 274 569 IPR011009 -
Amo13g4564 593 Gene3D LysM domain 125 184 IPR036779 -
Amo13g4564 593 SMART LysM_2 133 179 IPR018392 -
Amo13g4564 593 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 2 593 IPR044812 GO:0019199|GO:0045087
Amo13g4564 593 Gene3D Phosphorylase Kinase; domain 1 266 359 - -
Amo13g4564 593 ProSiteProfiles Protein kinase domain profile. 288 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4564 593 SUPERFAMILY LysM domain 132 179 IPR036779 -
Amo13g4564 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Amo13g4564 593 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 2 593 - -
Amo13g4564 593 SMART serkin_6 288 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4564 Amo-Chr13 142648445 142651310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4564 262 593 Receptor kinase-like Gene Family AT1G51940 51.039 1.86e-115 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo13g4564 Pkinase 2.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4564 - - gmx:100791718 758.829