Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4561 TTGGGTATTAATTCATCTCGATCTCGAAAAGTATTTGGAACTAGGGGTGGCAAGCGGGGAAGTTCCCCTCTCCGCCTCTCTACCGCGACCCACTCCTCTGATCGCTTCCGCTTCTATTTTGTAGCAGTGAACATAACATTCCAAAACACAGCACGACCAAGCAAGCACCAAGCAATTGCCTTTAGAAGCGGAGCCGACTTATCAACACTCTACGCCCATTTCATGCGTCAATTCTACAACGACTGCCACATTTATGGCACCGTTAATTTTATTTTCGGTAACGCCGCTGTAGTCTTCCAAAATTGCAACATCTTCCCCCGCCTTCTTATGACCGGCCAATTCAACTCAATTACTGTACAAGACAAAACCATTCCCAACCAAAATACCGGAATCTCCATACACAACGCAACAATTCGACCCGCTGACGATTTGGCCCCTCGCGTTGGTGTTGTGAAAACGTACCTTGGTAGGTCGTGGAAGCAATACTCGAGGACGATTTTATCAAAAGAATATAAAAAAATATTTATTTAA 531 0.4482 LGINSSRSRKVFGTRGGKRGSSPLRLSTATHSSDRFRFYFVAVNITFQNTARPSKHQAIAFRSGADLSTLYAHFMRQFYNDCHIYGTVNFIFGNAAVVFQNCNIFPRLLMTGQFNSITVQDKTIPNQNTGISIHNATIRPADDLAPRVGVVKTYLGRSWKQYSRTILSKEYKKIFI* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4561 176 PANTHER PECTINESTERASE 40 171 - -
Amo13g4561 176 PANTHER PECTINESTERASE 40 171 - -
Amo13g4561 176 Pfam Pectinesterase 39 169 IPR000070 GO:0030599|GO:0042545
Amo13g4561 176 Gene3D - 3 175 IPR012334 -
Amo13g4561 176 MobiDBLite consensus disorder prediction 1 26 - -
Amo13g4561 176 SUPERFAMILY Pectin lyase-like 39 168 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4561 Amo-Chr13 142591444 142593560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4561 40 171 Carbohydrate Esterase AT4G02330 63.194 6.76e-59 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4561 K01051 - gmx:100786124 202.601