Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4544 ATGGCTCCGCCCCTGCTGGTTACCAAGGAGGAAGGGCTGAGCAACGCTTCAACTGTAGCGTCTGCATCTTCGCCACAATCCTTGGACTGCTTCTCCCAAAATGGAGGGGTTTCCTTGAAAGAACGCAACTACTTGGGTTTGTCCGATTGCTCATCAGTAGACAGTTCAGCTGCGCCTGGCATGTCTGATGAGAAAAAGGACAATCTGAATTTGAAGGCCACCGAGTTGAGGCTCGGCCTTCCTGGATCCCAATCTCCTGAAAGGGGTCCAGACATCTTCTCATTGAGCTCAACAAAGCTTGATGAGAAACCACTGTTCCCATTGCTCCCGCTCCCTACGAAAGATCCGTGCTCATCAACTCAAAAGACTGTAGTTTCGGGAAACAAAAGGGGTTTTGCTGATGCAATGGATGGATTCCCCGAGGGAAAGTTTACTGGTACTGCAGCAATAAATGTGATGCTATCACCAAGACCTGCTGGACTGCAACCAACTGCAAAGAAGGAAATACAAAGCAAGGTATTACAAGGAGAGACCGGCGCAGTCAGTGGAACAGGAGGTGCTGTCGGCGGCAGTTCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCGTTGGCTACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAAGCCCGGCGGTGCTCTTCGTGAAGGTGAGCATGGATGGTGCTCCATATCTGAGGAAGGTTGATCTGAGGAATTATACGACATATCAGGAATTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTATCTTAGGTCAGTGTGGTTCGCATGGGGCTCCAGGAAGAGAAATGATGAGTGAGAGCAAGCTGAAGGATCTCCTGCATGGTTCAGAATATGTACTTACTTATGAAGACAAAGATGGCGACTGGATGCTCGTAGGAGATGTGCCTTGGGAGATGTTCATTGACACATGCAAGAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCTGTGGAAAAATCCAGGAGCAGGAGCTAG 1056 0.4867 MAPPLLVTKEEGLSNASTVASASSPQSLDCFSQNGGVSLKERNYLGLSDCSSVDSSAAPGMSDEKKDNLNLKATELRLGLPGSQSPERGPDIFSLSSTKLDEKPLFPLLPLPTKDPCSSTQKTVVSGNKRGFADAMDGFPEGKFTGTAAINVMLSPRPAGLQPTAKKEIQSKVLQGETGAVSGTGGAVGGSSPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPSPAVLFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFILGQCGSHGAPGREMMSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAVEKSRSRS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4544 351 Gene3D - 228 345 - -
Amo13g4544 351 SUPERFAMILY CAD & PB1 domains 229 332 - -
Amo13g4544 351 PANTHER AUXIN-INDUCED PROTEIN 20 344 - -
Amo13g4544 351 MobiDBLite consensus disorder prediction 1 32 - -
Amo13g4544 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 344 IPR003311 GO:0005634|GO:0006355
Amo13g4544 351 Pfam AUX/IAA family 74 342 IPR033389 -
Amo13g4544 351 MobiDBLite consensus disorder prediction 11 32 - -
Amo13g4544 351 ProSiteProfiles PB1 domain profile. 231 335 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4544 Amo-Chr13 142251790 142256435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4544 245 331 B3 DNA Binding Superfamily AT1G19220 32.184 4.52e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo13g4544 AUX_IAA 4e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4544 K14484 - gmx:100500373 515.383