Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4540 ATGGGATCAGCTTCTGCAATTGAAGGATTTGAGAGCATAGCATGCTGTGCTGATTCAAACTATAAAGATCCATTGACCAACTTAGATTACAAAACAGATTATGCTTGGTTCTCTGATACAAGAAGTTGCAGGCCAATAACTAGTGTGTTAAAACATTCAACCTATGGAAGATTAAGAGTGTTTGAAATAGAAAAGGGAAAGAGATGTTACAATTTGGCCACAACTAAGGATCAAGTGTATCTGATAAGGGGCACATTTCCATCTGAAAATGAACCAGGTAAAGGTTCCTTTGGTGTTTCTATAGGGGTAACAGTGTTAGGTACAGTGAGATCATCATCGCAGGACTTGAGAATTGAAGGAGTTTTCAGAGCCACAAAGAACAACACAGACTTTTGCCTAGTGACAGAAGAGGGTAACCCTTATATATCTCAGCTTGAGCTAAGATCAGTGTCTGAAGAGTATCTGCAGGGTTTGAATTCTAGTGTCCTGAAGCTGATCAACAGAAGTAATCTTGGGGGAAAAGAAGATGACATAAGGTACCCAATTGATCAAAGTGATAGAATCTGGAAAAGAACTACTACAAGTCCATACACTCCTATATCATTCAATATTAGCATTTTGGACCACAAATCTAATGTGACACCTCCTCTGAAAGTTCTACAAACAGCTTTGACTCACCCTGAAAGGTTGGAATTCAATAACAATGGCCTTGAGGTTAAGGAGGATTACGAGTACCTTGTGTTTCTCTACTTCCTTGAATTGAATAACAGTGTTAGAGAAGGCCAAAGAGTGTTTGACATCTATGTTAACAGTGAGATTAAGAAGGCTAGTTTTGATGTATTAAGTGAAGGGTCAAATTATAGACACATTGTGTTGAATGCTTCTTCAGCAAATGGATCACTTAATCTAACATTGGTCAAGGCATCTGGATCTGTGTTTGGACCCTCTTGTAATGCTTATGAGATCATGCAGGTGCGACCATGGAAGCAAGAAACCAACCAAACAGATTTGGAGGTGATTTTGAAGATAAGAGAAGAACTAATCACTGAAAACCATGATAACAAAGTCCTACAAAGCTGGACCGGTGACCCATGCATGCTTTTTGCATGGCAAGGAATATCATGTGATTTTTCCAATGATGCACCTGTTATCATTAAGCTGGATCTTTCCTTAAGTAATCTGAAAGGACCACTTCCATCCAGTGTCACAGAGTTGACTAACTTACAAATAATGAACCTTAGCCACAACAACTTCAATGGCTATATCCCCTCATTTCCAAGTTACTCAATGCTCACTTCACTAGATCTGAGATACAATGATCTTATGGGGTCACTTCCACCGTCATATAACTCACTGCCACATTTAAAGTCAATATATTATGGCTGCAATGATCGCATGGACCATAAGCTTTCAGGAAACTTGAACATTTCAATCAATACAGATAATGGAAGTTGTCAGAAAGGGAATGATTTTCCACAACAAGTAGCAATTATTTCAGCCGTTGCATGTGGCTCTTTCTTGATTGCTATGGCTGTTGGAACAATTTTCATTTATCGTTATAGACAGAGATTAAATCCATTGGAAGCATTTGGAAGAAAAAGCAACCCAATGATAACAAATGTGATATTCTCATTGAACAGCATAGACGATTTCTTGATAAAATCTATTTCAATTCAAGCATTCACTTTGGAATATATAGAGGTTGCAACCGAAAAGTACAACATTTTGATAGGTGAAGGAGGCTTTGGTTCTGTCTACCGTGGCACCCTAGAAAATGGTCAAGTTGTGGCTGTGAAGGTTCGGTCAGCCACATCAACGCAAGGCACCCGAGAATTTGATAATGAGCTAAACCTGCTTTCTGCAATAAGGCATGAGAACCTGGTGCCTCTTCTTGGATATTGTAATGAAAATGATCAGCAAATTCTGGTATATCCTTTTATGTCCAATGGCTCTCTACAAGATAGACTATATGGGGAACCTGCAAAGAGAAAAATACTAGATTGGCCAACCAGACTGTCTATTGCTCTTGGTGCCGCTCGAGGCAAGGATGTGAAATCAAGCAATATACTTTTGGATCACAGCATGTGTGCTAAGGTTGCAGATTTTGGTTTTTCAAAATATGCTCCACAGGAAGGAGACAGTGCTGTTTCGCTTGAAGTAAGAGGAACTGCAGGATATCTTGATCCTGAGTACTACACAACCCAGCAATTATCTGCAAAGAGTGATGTCTTCAGCTTTGGTGTGGTTCTTCTTGAAATTGTGAGTGGCCGGGAGCCTCTCAACATCCACAGACCGCGGAATGAGTGGAGTTTGGTTGAATGGGCTAAACCGTACATAAGGGCATCAAAGATTGAGGAAATTGTGGATCCTGGCATCAAGGGAGGGTACCATGCAGAAGCAATGTGGAGAGTGTTGGAAGTAGCACTGCAATGTGTTGAACCTTTCTCAACAAATAGACCGGCCATGGATGACGTCATGCGCGAGTTGGAGGATGCTCTGATCATAGAAAACAATGCATCAGAGTACATGAAGTCCATAGAGAGCCTTGGATCCAACCGTTACTCTATTGTCATAGAGAAAAGGGTGCCACCCTCGACCTCGTCAATGGTAGAATCAACCATCATACCTCAATCCTTGAACCATCCGCAGCCGAGGTAG 2658 0.4067 MGSASAIEGFESIACCADSNYKDPLTNLDYKTDYAWFSDTRSCRPITSVLKHSTYGRLRVFEIEKGKRCYNLATTKDQVYLIRGTFPSENEPGKGSFGVSIGVTVLGTVRSSSQDLRIEGVFRATKNNTDFCLVTEEGNPYISQLELRSVSEEYLQGLNSSVLKLINRSNLGGKEDDIRYPIDQSDRIWKRTTTSPYTPISFNISILDHKSNVTPPLKVLQTALTHPERLEFNNNGLEVKEDYEYLVFLYFLELNNSVREGQRVFDIYVNSEIKKASFDVLSEGSNYRHIVLNASSANGSLNLTLVKASGSVFGPSCNAYEIMQVRPWKQETNQTDLEVILKIREELITENHDNKVLQSWTGDPCMLFAWQGISCDFSNDAPVIIKLDLSLSNLKGPLPSSVTELTNLQIMNLSHNNFNGYIPSFPSYSMLTSLDLRYNDLMGSLPPSYNSLPHLKSIYYGCNDRMDHKLSGNLNISINTDNGSCQKGNDFPQQVAIISAVACGSFLIAMAVGTIFIYRYRQRLNPLEAFGRKSNPMITNVIFSLNSIDDFLIKSISIQAFTLEYIEVATEKYNILIGEGGFGSVYRGTLENGQVVAVKVRSATSTQGTREFDNELNLLSAIRHENLVPLLGYCNENDQQILVYPFMSNGSLQDRLYGEPAKRKILDWPTRLSIALGAARGKDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSAVSLEVRGTAGYLDPEYYTTQQLSAKSDVFSFGVVLLEIVSGREPLNIHRPRNEWSLVEWAKPYIRASKIEEIVDPGIKGGYHAEAMWRVLEVALQCVEPFSTNRPAMDDVMRELEDALIIENNASEYMKSIESLGSNRYSIVIEKRVPPSTSSMVESTIIPQSLNHPQPR* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4540 885 CDD STKc_IRAK 577 830 - -
Amo13g4540 885 ProSitePatterns Protein kinases ATP-binding region signature. 577 599 IPR017441 GO:0005524
Amo13g4540 885 Pfam Leucine rich repeat N-terminal domain 334 376 IPR013210 -
Amo13g4540 885 ProSiteProfiles Protein kinase domain profile. 571 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4540 885 SUPERFAMILY Protein kinase-like (PK-like) 558 832 IPR011009 -
Amo13g4540 885 Gene3D Ribonuclease Inhibitor 332 486 IPR032675 -
Amo13g4540 885 Pfam Malectin-like domain 17 325 IPR024788 -
Amo13g4540 885 Gene3D Transferase(Phosphotransferase) domain 1 647 846 - -
Amo13g4540 885 Gene3D Phosphorylase Kinase; domain 1 544 646 - -
Amo13g4540 885 PANTHER OS07G0107800 PROTEIN-RELATED 54 847 - -
Amo13g4540 885 Gene3D - 164 326 - -
Amo13g4540 885 Pfam Protein tyrosine and serine/threonine kinase 576 829 IPR001245 GO:0004672|GO:0006468
Amo13g4540 885 PANTHER OS05G0525400 PROTEIN 54 847 - -
Amo13g4540 885 SUPERFAMILY L domain-like 352 467 - -
Amo13g4540 885 SMART serkin_6 571 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4540 Amo-Chr13 142169555 142174678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4540 5 836 Receptor kinase-like Gene Family AT1G67720 33.595 3.22e-117 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo13g4540 Malectin_like 2e-47 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4540 - - gmx:100781986 1215.29