LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g4536	ATGGCTTCCACTTTCCACCATCATCATCCACATACCCTTATTCCACTAATCATCTTATACTCCATTTTCTTCTCTTTTCATCCTGCTTACTCAATTCAATTCCAAATCCCTGTTTTCAATCCTGGTGATGCCAACATACTCTACCTAGGATCTGCAGCAACAAGGGATGGTTCTGCTGATTTCAATGTGAATGACTTATACACTTGCCAAGTTGGATGGACCATTTACTCCAAGAAGGTGTTACTGTGGGACTCAAGAACTGGTAAACTAACTGATTTCACAACTCACTATACATTCATCATTGACACAGGAAATAAAACCACCTATGGCCATGGTCTTGCATTCTTCCTTGCCCCTGTTGATTTTGAAATCCCACCCAATTCCTCTGGTGGATTTCTTGGATTATTCAACACCACAACAAAGGATTCAGCACAGAATCAAATTGTCCTGGTTGAGTTTGACTCTTACCCAAACTCTGAATGGGGTGAAACTGTGCAGCATGTTGGGATCAACAACAATTCAATTGTTTCAACAAAGTGGACCCCTTGGAATACTAGTTTACACAGTGGAGATACTGCTGATGTTTGGATTAGTTACAACTCCACAACTAAGAACTTGAGTGTATCTTGGAAGTACCAAAACTCATATGATCCTGAAGAACACACTAGTCTCTCTCTTGCAATTGATTTGACAAGGGTCGTACCTGAGTGGGTTACAATTGGATTTTCTGCTGCAACAGGTTACTTTGGAGAGACTCACACTCTTCTGTCATGGGAGTTCAACTCAACTTTGGACAGAGCTGAAGAAAACAATTCAAAGAAGACAAGGTTAGTAGTGATTCTAACTGTTTCTTGTAGTGCTCTAGCAGTGGGAGCAATTGCAGCATTTGGAGTACTTTGGAATAGGAGGAAGAAGAAAAGCAAGAAAGATCAATTAGAGGCTATGAATTTAACCTCAATGAATGATGACCTTGAAAGAGGAGCAGGACCAAGAAGGTTCTCGTACAAAGAACTTGCTTTGGTTACCAACAACTTCTCCAAAGACAGGTTGTTGGGTAAAGGAGGGTTTGGATCTGTCTACAGAGGTTACTTTGCAAATCAAGACTTATCAGTTGCTGTGAAGAAGATATCAAGGGGATCTAGACAAGGGAAGAAAGAGTATGTAACTGAGGTCAAAGTCATTAGCCAACTTAGACACAGGAACCTTGTGCAACTCTTGGGTTGGTGCCATGACAAAGGGGAGTTCTTGCTTGTTTACGAGTTCATGCCGAATGGAAGTCTTGACTCTCACCTATTTGGTAGCAAAAAGTCACCAATCCCATGGAATGTGAGGCACAAGATAGGGCTTGGATTAGCATCTGCAGTGCTATATCTTCATGAAGAATGGGAGAGGTGTGTGGTGCATAGGGACATCAAATCAAGCAATGTCATGCTGGATTCCACCTTCAATGTGAAGCTAGGTGACTTTGGACTAGCCAAGCTCATGGACCATGAACTTGGTCCCCAAACAACAGGGATAGCTGGAACATTAGGGTACCTAGCACCAGAATATGTGAGCACAGGAAGGGCAAGTAAAGAATCTGATGTGTACAGCTTTGGTGTGGTAGCATTGGAGATAGCCACAGGGAAGAAAGCCCTTGATGTGATGGAAGATTGTGATGGTGAAAAGGGGTTGGTTGAGTGGGTTTGGGACCATTATGGAAGAGGAGAACTGGTTGTGGCAGTTGATGAGAGGTTGGGGAAAGATTTTGATGAAAGGGAAGCAGAGTGCTTGATGATTGTGGGGCTATGGTGTGCTCACCCTGATGCAACTATGAGACCGTCAATAAGACAAGCAGTTCATGTGCTTAATTTTGAAGCTGCCATGCCAATCAACCTTCCAACAAAGAGGCCTGTTGCAATATACCATGATCCTACTATTACACCAACACCAACACCAACACCATCAGTGCAAGATTCTATAACCACAAGCCTTCACACTGGTCGTTGA	1989	0.4284	MASTFHHHHPHTLIPLIILYSIFFSFHPAYSIQFQIPVFNPGDANILYLGSAATRDGSADFNVNDLYTCQVGWTIYSKKVLLWDSRTGKLTDFTTHYTFIIDTGNKTTYGHGLAFFLAPVDFEIPPNSSGGFLGLFNTTTKDSAQNQIVLVEFDSYPNSEWGETVQHVGINNNSIVSTKWTPWNTSLHSGDTADVWISYNSTTKNLSVSWKYQNSYDPEEHTSLSLAIDLTRVVPEWVTIGFSAATGYFGETHTLLSWEFNSTLDRAEENNSKKTRLVVILTVSCSALAVGAIAAFGVLWNRRKKKSKKDQLEAMNLTSMNDDLERGAGPRRFSYKELALVTNNFSKDRLLGKGGFGSVYRGYFANQDLSVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVQLLGWCHDKGEFLLVYEFMPNGSLDSHLFGSKKSPIPWNVRHKIGLGLASAVLYLHEEWERCVVHRDIKSSNVMLDSTFNVKLGDFGLAKLMDHELGPQTTGIAGTLGYLAPEYVSTGRASKESDVYSFGVVALEIATGKKALDVMEDCDGEKGLVEWVWDHYGRGELVVAVDERLGKDFDEREAECLMIVGLWCAHPDATMRPSIRQAVHVLNFEAAMPINLPTKRPVAIYHDPTITPTPTPTPSVQDSITTSLHTGR*	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g4536	662	ProSitePatterns	Protein kinases ATP-binding region signature.	351	375	IPR017441	GO:0005524
	Amo13g4536	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	466	478	IPR008271	GO:0004672\|GO:0006468
	Amo13g4536	662	MobiDBLite	consensus disorder prediction	639	662	-	-
	Amo13g4536	662	PANTHER	-	28	654	-	-
	Amo13g4536	662	PANTHER	PUTATIVE-RELATED	28	654	-	-
	Amo13g4536	662	CDD	lectin_legume_LecRK_Arcelin_ConA	32	264	IPR001220	GO:0030246
	Amo13g4536	662	SUPERFAMILY	Protein kinase-like (PK-like)	329	649	IPR011009	-
	Amo13g4536	662	Gene3D	Transferase(Phosphotransferase) domain 1	422	637	-	-
	Amo13g4536	662	ProSitePatterns	Legume lectins alpha-chain signature.	234	243	IPR000985	-
	Amo13g4536	662	Pfam	Legume lectin domain	32	274	IPR001220	GO:0030246
	Amo13g4536	662	Gene3D	Phosphorylase Kinase; domain 1	330	421	-	-
	Amo13g4536	662	ProSiteProfiles	Protein kinase domain profile.	345	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo13g4536	662	Gene3D	-	29	289	-	-
	Amo13g4536	662	SMART	serkin_6	345	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo13g4536	662	CDD	STKc_IRAK	351	617	-	-
	Amo13g4536	662	Pfam	Protein kinase domain	346	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo13g4536	662	SUPERFAMILY	Concanavalin A-like lectins/glucanases	29	278	IPR013320	-
	Amo13g4536	662	MobiDBLite	consensus disorder prediction	646	662	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g4536	Amo-Chr13	142108018	142113008	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g4536	17	636	Receptor kinase-like Gene Family	AT5G10530	56.550	0.0	712

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Amo13g4536		Pkinase	1e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g4536	-		-	mtr:MTR_8g067690	884.019