LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g4533	ATGGCCTTGTTTTCTATGTTTATGATCTTCACTTGGTTGACTTTTCTCTTTAACACTAAAACTGTAGAGTCTGTTTCATTCAACTTGGATAATTTCATGCCAAATCTATACCTAATTAAATTCGAGGGCGATGCATTTGTGTCGGAAAAAGTTTTACAGCTGACAAAGAACAGAATCGACGGCCCTATTACAAAAAGCGTGGGCCGCGCCTCGTTTGATCAACCGGTGAAGCTTTGGGATAAAGGAACAAGACAGCTCACTGATTTCACCACACATTTCTCTTTTATTATGAAAGCTATCAATCCCAACATGTTCGGTGATGGATTATCATTCTACATTGCACCTTTTGAATCAACCATCCCAAACAATTCAGTTGGAGGATTCCTTGGCCTCTTCAGCGGGGAATCTGCATTCAACACCACTGCCAATCAAATAGTCGCTGTCGAGTTTGACAGCTTTGAGAATCCATGGGATCCAAACCCTAATCATGTTGGGATCAATGTTAATTCTATAATATCTGTTGCAAACGTGAGTTGGAATAGGAACATGAAGAATGGATCCATTGCTAATGCTTGGGTTTCATACAACTCCACCACCAAGAATCTCTCCGTGTTCCTTACTTATGCAGATAATCCAACATTCAACGGCACTTTTAGTCTCTCACATGTCATTGATCTCAGGGAATTCTTGCCGGAATTTGTTAGGATTGGATTCTCCGCCGCCACCGGTGATTGGATCGAAATACACAACGTTTTGTCTTGGTCATTCAATTCAACCTTGGACTCTAGCACGGGGAAAAGCAAGGTTGGTTTGGCAAGTGGTTTGAGTGTTGGATTCGGTACTCTAGCATGTTTAATAGGTGTTATTTGTTTTGTATTTTGGAGGAAGAGAAGAAACCGAGCCAGGAAAGACGAGGACGATACGGGCTTCGATGCTTCTATAGAAGATGAATTCGAAAGAGGAACCGGTCCGAAGCGGTTCACTCAGAAGGAGCTAAGCCAAGCGACGAACGGGTTCGCGGAAGAAGGAAAGCTGGGAGAAGGAGGATTTGGAGGTGTGTACAAAGGAGCAGTAGGGAATCCAAGAATGGAAGTTGCGGTGAAGAGAGTATCGAAAGGATCAAAACAGGGGAAAAAGGAGTACATATCAGAAGTAAGAGTAATAAGCAGGCTGAGGCACAGGAATTTGGTTCAACTCATAGGCTGGTGCCATGAGAAAGGTGAGTTTCTTCTTGTTTATGAGTACATGCCTAATGGTAGCCTTGACTCTCATTTGTTTGGAAAAGGAGTCATGCTTGCTTGGGCTGTAAGGTACAAGATTGCATTGGGTTTGGCATCTGCACTTGTTTATCTTCATGAAGAATGGGAACAATGTGTGGTGCATAGGGATATTAAGTCAAGTAATGTCATGTTAGATGCCAATTTCAATGCCAAACTCGGCGATTTCGGTCTAGCAAGGTTGGTGGACCATGAACTGGGGACTCAAACCACGGTTTTGGCCGGCACCATGGGATACCTAGCCCCGGAGTGTGTCACCACTGGGAAATCAAGTAAGGAATCTGATGTGTATAGCTTTGGCGCCGTGGCGCTCGAGATAGCGTGCGGGCGAAGGCCGGTTCAAGTTAAAGAAGAGCCCGGCAAAGTGAGGCTGATAGAATGGGTGTGGAACTTGTATGGACAGGGGAAGCTTCTAGAAGCCGCTGATTGGAGGTTAGATTTGGAATTTGATGTGAAGCAAATGGAGTGCTTGATGACCGTTGGATTGTGGTGTTGTCACCCTGATTATGCTATGAGGCCTTCTATAAAGCAAGTGATAAATGTGCTTAATTTTGAAGCTCCTTTGCCATCACTTCCATCACAGTTACCTGTGCCTATGTACTTCGCACCTCCCATGGAGATGTGCAAATTCACCTACACTTCTTCTGGAACCACAGCCACATCTAAAGACTCCTCAAACTACTCATCCATGTCAGCAGGGTCCAGAAAATCTCTATTATAG	1998	0.4424	MALFSMFMIFTWLTFLFNTKTVESVSFNLDNFMPNLYLIKFEGDAFVSEKVLQLTKNRIDGPITKSVGRASFDQPVKLWDKGTRQLTDFTTHFSFIMKAINPNMFGDGLSFYIAPFESTIPNNSVGGFLGLFSGESAFNTTANQIVAVEFDSFENPWDPNPNHVGINVNSIISVANVSWNRNMKNGSIANAWVSYNSTTKNLSVFLTYADNPTFNGTFSLSHVIDLREFLPEFVRIGFSAATGDWIEIHNVLSWSFNSTLDSSTGKSKVGLASGLSVGFGTLACLIGVICFVFWRKRRNRARKDEDDTGFDASIEDEFERGTGPKRFTQKELSQATNGFAEEGKLGEGGFGGVYKGAVGNPRMEVAVKRVSKGSKQGKKEYISEVRVISRLRHRNLVQLIGWCHEKGEFLLVYEYMPNGSLDSHLFGKGVMLAWAVRYKIALGLASALVYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGTQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGAVALEIACGRRPVQVKEEPGKVRLIEWVWNLYGQGKLLEAADWRLDLEFDVKQMECLMTVGLWCCHPDYAMRPSIKQVINVLNFEAPLPSLPSQLPVPMYFAPPMEMCKFTYTSSGTTATSKDSSNYSSMSAGSRKSLL*	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g4533	665	Gene3D	Phosphorylase Kinase; domain 1	324	415	-	-
	Amo13g4533	665	PANTHER	-	16	641	-	-
	Amo13g4533	665	CDD	lectin_legume_LecRK_Arcelin_ConA	25	260	IPR001220	GO:0030246
	Amo13g4533	665	PANTHER	RECEPTOR LECTIN KINASE	16	641	-	-
	Amo13g4533	665	ProSitePatterns	Legume lectins beta-chain signature.	146	152	IPR019825	-
	Amo13g4533	665	SMART	serkin_6	339	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo13g4533	665	CDD	STKc_IRAK	353	609	-	-
	Amo13g4533	665	ProSitePatterns	Legume lectins alpha-chain signature.	230	239	IPR000985	-
	Amo13g4533	665	MobiDBLite	consensus disorder prediction	644	665	-	-
	Amo13g4533	665	ProSiteProfiles	Protein kinase domain profile.	339	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo13g4533	665	SUPERFAMILY	Protein kinase-like (PK-like)	323	634	IPR011009	-
	Amo13g4533	665	ProSitePatterns	Protein kinases ATP-binding region signature.	345	368	IPR017441	GO:0005524
	Amo13g4533	665	Pfam	Legume lectin domain	25	263	IPR001220	GO:0030246
	Amo13g4533	665	SUPERFAMILY	Concanavalin A-like lectins/glucanases	23	261	IPR013320	-
	Amo13g4533	665	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	459	471	IPR008271	GO:0004672\|GO:0006468
	Amo13g4533	665	Pfam	Protein kinase domain	340	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo13g4533	665	Gene3D	Transferase(Phosphotransferase) domain 1	416	629	-	-
	Amo13g4533	665	Gene3D	-	22	273	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g4533	Amo-Chr13	142094870	142096867	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g4533	13	626	Receptor kinase-like Gene Family	AT5G10530	51.664	0.0	598

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Amo13g4533		Pkinase	3.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g4533	-		-	gmx:100791518	988.793