Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4532 ATGACTATGCAACTCTGCTTCTTCTTCTTGTTGTTGCTTGGTGCCTCCTCTTCTGATAAGACAACATTAAGAAAAAGTTTAAGAAAGAACAACAGTATACAAACACCATCATCTTCCAATTTTGCAGTTAAGCTTAATGAAAAAAGCCATCAGCAGTTGGTGATTGACAACGGTATCGTTTCAGTAACTTTATCTATACCAGAGGGTTATGTCATTGGTGTATCCTATAACGGAATTGAGAATGTACTTGAACCTCAAAATGAAGAACAAGATAGAGGGTACTTCGATGTTGTTTGGAATGAACCAGGAAAACGCAGTATCTTTCAAAGTGCAGAATCCACGGAACAAATTTTTCGGTTATAG 363 0.3691 MTMQLCFFFLLLLGASSSDKTTLRKSLRKNNSIQTPSSSNFAVKLNEKSHQQLVIDNGIVSVTLSIPEGYVIGVSYNGIENVLEPQNEEQDRGYFDVVWNEPGKRSIFQSAESTEQIFRL* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4532 120 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 15 114 - -
Amo13g4532 120 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 15 114 - -
Amo13g4532 120 Pfam Rhamnogalacturonate lyase family 37 115 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4532 Amo-Chr13 142074983 142079624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4532 53 108 Polysaccharide Lyase AT1G09910 58.929 4.64e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4532 K18195 - gmx:100776664 129.413