Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo13g4525 | ATGGCCATTCACGATCAAAATCGAGTTACCACATCACAGGGTAGTCCTCCAGTGGGAAATGAAGTATCTTCGGGTTCTGAACTGAATTCTGTTACAGATATTCAACTCAAAGACCAGTTTTCAACCACAAATGATGGTGCTCTCAAGGTGAGGAAACCGTACACCATCAAGAAACAAAGAGAGAGGTGGACGGATGAAGAGCACAAGAAGTTCCTTGAGGCTTTAAAGTTACATGGCAGGGCCTGGCGTCGTATCGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTCCGTGACTCTAATGGTAAGATTATCAACTCTGCAGAGTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCGATGCATCCTTACCCCCGTAAGCTAGTAGGGACTCCTAATAAAATAACTTCCGTCAAAGAGCAGCCGAACAGGTCTAATTCTCTGAAGTCACAAGCAGATTTTGATCAAGAGAACCAATCTCCCAAGTCAGTGTTAACTGGGGTTGGTTCAGACAGTCATGGTTCCTCAGATTCAGATACACCTAACGGAAGCTTATCCCCAATGTCATCCGTTAGCGGGGTCAATTCAAGCGGATTTACACTTGTGGAACCCAAAACCCCATCCGAGGAAGCTGGACTAAATGCCGATTCAGCTCACAATGAGAACCCTCTTGTGATATCCAAGAAAGAAATCAAAGCAAGCATGGTAGAAGAATCATTTGGTCAGACTGTAAAGCTTTTCGGGATGACTCTATCGGTAACAAACACATGCAGACCCTCACCTTCATCAATTGAGGCATGCAAACCAATTCCTGTACACATAAATGTGCATTGCTTTGGCAAGGGGGAAGGAAAATCGGAAATTCCTAGCCATATTGTTCCAAGCGAAACTAGAGCAACATCCAAGCTAAGGCCTAGAATGAGAACTGAAACCTGTGGGAGAGGTTTTGTCCCATATAAAAGGTTCATGGCTGAGAGAGAAAAAAACCACTCTTCCACTGATAGGGAAGAGCAAGGCATCCGGCTTTCATTATAG | 1077 | 0.441 | MAIHDQNRVTTSQGSPPVGNEVSSGSELNSVTDIQLKDQFSTTNDGALKVRKPYTIKKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSNGKIINSAESIEIPPPRPKRKPMHPYPRKLVGTPNKITSVKEQPNRSNSLKSQADFDQENQSPKSVLTGVGSDSHGSSDSDTPNGSLSPMSSVSGVNSSGFTLVEPKTPSEEAGLNADSAHNENPLVISKKEIKASMVEESFGQTVKLFGMTLSVTNTCRPSPSSIEACKPIPVHINVHCFGKGEGKSEIPSHIVPSETRATSKLRPRMRTETCGRGFVPYKRFMAEREKNHSSTDREEQGIRLSL* | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo13g4525 | 358 | Pfam | Myb-like DNA-binding domain | 60 | 103 | IPR001005 | - | |
| Amo13g4525 | 358 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 55 | 109 | IPR017930 | - | |
| Amo13g4525 | 358 | PANTHER | SWI/SNF COMPLEX-RELATED | 15 | 282 | - | - | |
| Amo13g4525 | 358 | MobiDBLite | consensus disorder prediction | 119 | 233 | - | - | |
| Amo13g4525 | 358 | PANTHER | PROTEIN REVEILLE 7-RELATED | 15 | 282 | - | - | |
| Amo13g4525 | 358 | ProSiteProfiles | Myb-like domain profile. | 55 | 105 | IPR001005 | - | |
| Amo13g4525 | 358 | SMART | sant | 59 | 107 | IPR001005 | - | |
| Amo13g4525 | 358 | MobiDBLite | consensus disorder prediction | 338 | 358 | - | - | |
| Amo13g4525 | 358 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Amo13g4525 | 358 | MobiDBLite | consensus disorder prediction | 148 | 217 | - | - | |
| Amo13g4525 | 358 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 58 | 107 | IPR006447 | GO:0003677 | |
| Amo13g4525 | 358 | Gene3D | - | 62 | 108 | - | - | |
| Amo13g4525 | 358 | CDD | SANT | 62 | 105 | IPR001005 | - | |
| Amo13g4525 | 358 | SUPERFAMILY | Homeodomain-like | 54 | 107 | IPR009057 | - | |
| Amo13g4525 | 358 | ProSiteProfiles | SANT domain profile. | 58 | 109 | IPR017884 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo13g4525 | Amo-Chr13 | 141959913 | 141963318 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Amo13g4525 | Myb_DNA-binding | 5.9e-14 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo13g4525 | - | - | gmx:780539 | 415.231 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo13g4525 | 13 | 141959913 | 141963318 | Amo13g4525 | 13 | 141959913 | 141963318 | ECH |