Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4522 ATGAAACTAACTGCAACAACAACAACCATGACAATGGAAGAAGACTCCTTAGCTGCACTTCCATTTGACAGAGCTGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTAAAGTGTGGTCGCAGAGGAAAACCAAAGCTCTGCCCTTTCAGACTTTCCCCGGATGAGAGGAATTTGATTTGGTACTCAGGGCAGCAGGAAAAGCATTTGCGATTGAGTTCGGTTTCGAAGATTATTCAAGGGCAGGGAAATATAAGGTGCCAAAGGCAAAATGAAGCTGAAAAGGAGTGCCATTCATTTTCGCTAATCTATGCTGACAGTGAACACTCTCTTGATCTGATATGCAAGGACAAAGCACAGGCTACTACTTGGTTTGTTGGATTGAGAGCTGTGATTTCTCGGTGCCAGCATCCTCGACCTTTCAGTAGTTTAAGAAGCTGCAAAGGGGTTCAGAGTTGTGTCAGTAGTCCGGCCGGAATATTACGAAGAAAGAAAAATCTTGGCCTCCTGGATGATACCTCCCAATTTGCTCAGGTACATAGTGTATGCGCAAGTCCCACTTTGTCACTCTCAGAAAGGTGTTTTTCTGATGGCTTATCATATACATCTGATAAGTTTTATCCATCAACACCTTTCCTTTCCAGTGCAAATGACATGATTGATAATTCTGTCCCAAGTTCTCCATATATTGATCCAGATACTCCTATTAAGATCGAAACAACACGTCTCAACAAGGAGCACAAGAATTTGTCCTGCAGGTCTATGTTGAACCCCGCCACACCACTCATAAGAAACAACAATGCATTGAAGGATGTAATGGTTTGGGGTGGAGGGATTGGAGGTCTTGTAGGGATTGTAAATGAAAGGTTTGTGAACCAAGATGGAATATATTCTTTAGTTCCAAAGTTGCTAGAATCCACTATGATGTTAGATGTACAAAATATAGCTTTAGGAGGAAAACATGCTGCCTTGGTAACAAAAGAAGGGGAAGTGTTTTGTTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAAAAAATTGATATAGACACTAGCTCCCCGAAAATAGTCGATTCTCTTAATGGTGTTCATATAAAACAGGTAACCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATGCATGGGGGAATGATGTTTGTTGTTCGGATTTGGTTAATGAAGGCCGGATAAAAAATCAATGGATACCACATAAACTTTCAGGTCCTCTAGATGGTATTAGCATTTCAAGCATTGCTTGTGGAGAATGGCACACTGCCATTGTCTCTAGCTGTGGAAAATTATTTACATATGGAGATGGTACCTTCGGAGTTCTTGGCCATGGCAATCTTCAGAGCTGTTCTCGACCGAAACATGTTGAGTCTCTTAGTGGTCTAAAGGTGAGGTCTGTTGCTTGTGGTTCATGGCATACAGCTGCAATTGTGGAAGTCATGGTTGATCACTTTCGGTATAATACTCCTACGGGCAAGCTGTTTACTTGGGGAGATGCAGATGAAGGGAGGCTTGGTCATGCAGATAATGGAAACAAGCTTGTGCCGACTTGTGTTTCACAACTCGTTGACTATGATTTTGTTCAAGTAAGTTGTGGAAGAATGTTGACTGTAGCACTTACTAATATGGGCAAGGTATTTGCAATGGGAAGCGCGAGATATGGACAGCTCGGAAATCCTCACGCCAGAGATAGAGCAGTAATGGTTGAAGGACAGCTTAAACAAGAGTTTGTTAAAGTGATTTCGGCTGGTTCATATCATGTTGCTGTTTTGACTTCGGCCGGGAGTGTCTATACATGGGGCAAAGGTGAAAATGGTCAACTTGGACTAGGTGATAGCGAAGACAGATACACGCCTTCTTTTGTTGAGGCTCTAAGAGACAGGCAAGTAGAAACAATAACTTGTGGATCAAGTTTCACGGCTGCAATCTGTTTGCACAGACCGATTTCTATCAGTGACCAGTCAGCTTGTAGTGGGTGTAGGCTGCCGTTTGGATTCACAAGGAAGAAGCATAACTGTTATGATTGTGGCCTTCATTTCTGCCGCGCTTGTAGTAGTAAAAAGGTTATAAATGCTTCTCTAGCCCCAAGTAAGAGCAAGGCCTTTCGAGTTTGTGATCAGTGCTATGATAGAAGGCAAGGAAGTACACATTCAGCAGTGGCTTTGAAGTCTAGAAATTGCAACTCCCAGCAGCTGCACAGACTTCCTGATCTGACTGAAGATAGAGGAGAGACAACTATGGCACAGGGTCCTCTCTTGACGCTCGGCCAATCATGTTATAGGAAAAGCATGCCCAGTGGAAGAAAGGACTGGAAAAACCAACAAGAGAGCCAGCAGCATTTAGAAGATAGTTCTTCTTCTATGTTAGGTGGGATGCCCCAATGGGGGCAAGTTCCATGCCCTGCCCAATTTAGAATCAATTGTAAAGAAAATTTGGCTGGGCATGTTTCTTCGTCGAAAAATAAAGTAGCTACTGTTGCCCCACCAAATATAGAATCTCCTGCGGCAGCATTCAACTTCTCTAGTGCAGAGTCAGATACAACAAAGTCTGATAAGATGCTCATTGAAGAAGTTCAGAGGCTGAGAGCTGAGTTAAAGAGACTTGAAGAACAGTGTGAACTCAAAAACCATAAGATACAAGAGTGCCAACAGAAAATTGAGGAGAGTTGGTTTGTAGCAAAGGAGGAAGCTGCTAAGTCCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCTGTAAGGCTTCATACAATATCAGGAAAAGAGAATGCTGGACAAGAAGGAAAAGTTGGGATACATGATTGCATGTCTAATTTGGCACCCATACATATAGATATGAATAGTCCTAGGGATGGCAACATGGACAGTCTATCTAATTCCCCTATAGTATTCTCAGACACATTGAAATCAAAACTTGGGAGAAACATGTTACTCAAGAATGATAGAGTGACGGAAAATTCTAGCGTCGCTAAACCACAGTCACAGCAAGACAATACTGACAGCATGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTCACAACCTTGCCATGTGGGAAAAAGGGCCTTAAAAGGGTCAGATTCAGCCGGAAACGATTCTCGGAGAAGGAAGCAGAACGGTGGTGGGAAGAGAATCAATGCAGAGTGTACCATAAATATGAGATTGAAGGGTGTATAAACAATAGCCAAAGTCAGGTGAAAGGCTAA 3249 0.4266 MKLTATTTTMTMEEDSLAALPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSSVSKIIQGQGNIRCQRQNEAEKECHSFSLIYADSEHSLDLICKDKAQATTWFVGLRAVISRCQHPRPFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFAQVHSVCASPTLSLSERCFSDGLSYTSDKFYPSTPFLSSANDMIDNSVPSSPYIDPDTPIKIETTRLNKEHKNLSCRSMLNPATPLIRNNNALKDVMVWGGGIGGLVGIVNERFVNQDGIYSLVPKLLESTMMLDVQNIALGGKHAALVTKEGEVFCWGQGKWGRLGQKIDIDTSSPKIVDSLNGVHIKQVTCGEYHTCALTDSGEVYAWGNDVCCSDLVNEGRIKNQWIPHKLSGPLDGISISSIACGEWHTAIVSSCGKLFTYGDGTFGVLGHGNLQSCSRPKHVESLSGLKVRSVACGSWHTAAIVEVMVDHFRYNTPTGKLFTWGDADEGRLGHADNGNKLVPTCVSQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSARYGQLGNPHARDRAVMVEGQLKQEFVKVISAGSYHVAVLTSAGSVYTWGKGENGQLGLGDSEDRYTPSFVEALRDRQVETITCGSSFTAAICLHRPISISDQSACSGCRLPFGFTRKKHNCYDCGLHFCRACSSKKVINASLAPSKSKAFRVCDQCYDRRQGSTHSAVALKSRNCNSQQLHRLPDLTEDRGETTMAQGPLLTLGQSCYRKSMPSGRKDWKNQQESQQHLEDSSSSMLGGMPQWGQVPCPAQFRINCKENLAGHVSSSKNKVATVAPPNIESPAAAFNFSSAESDTTKSDKMLIEEVQRLRAELKRLEEQCELKNHKIQECQQKIEESWFVAKEEAAKSKAAKEVIKALAVRLHTISGKENAGQEGKVGIHDCMSNLAPIHIDMNSPRDGNMDSLSNSPIVFSDTLKSKLGRNMLLKNDRVTENSSVAKPQSQQDNTDSMKVEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAERWWEENQCRVYHKYEIEGCINNSQSQVKG* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4522 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 554 604 IPR000408 -
Amo13g4522 1082 MobiDBLite consensus disorder prediction 788 802 - -
Amo13g4522 1082 SUPERFAMILY FYVE/PHD zinc finger 660 731 IPR011011 -
Amo13g4522 1082 Gene3D - 492 661 IPR009091 -
Amo13g4522 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 502 550 IPR000408 -
Amo13g4522 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 331 380 IPR000408 -
Amo13g4522 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 439 487 IPR000408 -
Amo13g4522 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 383 434 IPR000408 -
Amo13g4522 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 605 653 IPR000408 -
Amo13g4522 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 383 IPR000408 -
Amo13g4522 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 273 331 IPR000408 -
Amo13g4522 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 438 IPR000408 -
Amo13g4522 1082 SMART fyve_4 655 724 IPR000306 GO:0046872
Amo13g4522 1082 Pfam Pleckstrin homology domain 27 133 IPR001849 -
Amo13g4522 1082 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 25 1070 - -
Amo13g4522 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
Amo13g4522 1082 SUPERFAMILY RCC1/BLIP-II 273 657 IPR009091 -
Amo13g4522 1082 Pfam FYVE zinc finger 663 721 IPR000306 GO:0046872
Amo13g4522 1082 SUPERFAMILY PH domain-like 25 135 - -
Amo13g4522 1082 MobiDBLite consensus disorder prediction 773 802 - -
Amo13g4522 1082 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 477 487 IPR000408 -
Amo13g4522 1082 CDD FYVE_like_SF 666 719 - -
Amo13g4522 1082 Coils Coil 861 895 - -
Amo13g4522 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 732 IPR013083 -
Amo13g4522 1082 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Amo13g4522 1082 Gene3D - 25 141 IPR011993 -
Amo13g4522 1082 ProSiteProfiles BRX domain profile. 1013 1068 IPR013591 -
Amo13g4522 1082 PRINTS Chromosome condensation regulator RCC1 signature 425 441 IPR000408 -
Amo13g4522 1082 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Amo13g4522 1082 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Amo13g4522 1082 PRINTS Chromosome condensation regulator RCC1 signature 274 290 IPR000408 -
Amo13g4522 1082 PRINTS Chromosome condensation regulator RCC1 signature 441 455 IPR000408 -
Amo13g4522 1082 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Amo13g4522 1082 PRINTS Chromosome condensation regulator RCC1 signature 543 561 IPR000408 -
Amo13g4522 1082 CDD PH_PLC_plant-like 24 136 - -
Amo13g4522 1082 Pfam Transcription factor regulating root and shoot growth via Pin3 1013 1067 IPR013591 -
Amo13g4522 1082 Gene3D - 396 491 IPR009091 -
Amo13g4522 1082 Gene3D - 265 395 IPR009091 -
Amo13g4522 1082 PANTHER F12P19.9 PROTEIN 25 1070 - -
Amo13g4522 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Amo13g4522 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 553 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4522 Amo-Chr13 141901061 141906894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4522 1009 1070 Major Intrinsic Protein MIP AT1G31880 46.774 7.44e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4522 - - adu:107481014 2180.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4522 13 141901061 141906894 Amo13g4522 13 141901061 141906894 ECH