Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4505 ATGAAACCAAGATTTGATCTGGAATTGGAGGCCTCAGCAGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAACATATCCTCTCTTCAAGAAACCTCTGCAGGCCCTTCAACTGACACCTTAACCAACTCTTACAAACTCGCGAATCCAATGGAGTTCGATGCTCTCTCGCTTGATTTAACTCTCAGCTTTGGCAACAATGAAACAGGGGAAAAAGCAGGGGATTCAATAGGACTCTCATTCTCTAGCACTAGTGAAAGCAGCAATGAACCAACTTTCCAAACTGGCACTGTACCAAGAGTCTTCTCTTGCAATTACTGCCAGCGCAAATTTTTCAGCTCGCAGGCTCTTGGAGGCCACCAGAACGCGCACAAGAGGGAGCGAACGCTGGCAAAGCGCGCCATGCGAATGGGGCTATTCTCTGAGAGGTATGCTAGTTTAGCATCTCTGCCTCTTCATGGTTCTTTCAGATCCTTGGGGATTAAGGCACACTCTTCAGTTCATCAGCAAGCATTTGCACCATCAATTAGGCCTCCTGAGATAAAAACAAATGCAAGATTCGACCAAGGTTATGTCGGCCTTCCTATATTCTTGGAGGATGATGAGTCAGAACTGCTCTGGCCTGGTAGTTTCCGGCAGGTTACTAGCGAAGGAGGCGATAGCAATCAGGCATTCGTGCTGGCCGGGAGTTCGAATTTGAGTTTTACTGAGGTGAATCCACCAGTTGAGATAGATAACTCTACACCTGAATTAACATTGAAGCTTTAA 774 0.4651 MKPRFDLELEASAAEYESEVSSQVASNISSLQETSAGPSTDTLTNSYKLANPMEFDALSLDLTLSFGNNETGEKAGDSIGLSFSSTSESSNEPTFQTGTVPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGLFSERYASLASLPLHGSFRSLGIKAHSSVHQQAFAPSIRPPEIKTNARFDQGYVGLPIFLEDDESELLWPGSFRQVTSEGGDSNQAFVLAGSSNLSFTEVNPPVEIDNSTPELTLKL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4505 257 MobiDBLite consensus disorder prediction 24 45 - -
Amo13g4505 257 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Amo13g4505 257 MobiDBLite consensus disorder prediction 77 96 - -
Amo13g4505 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Amo13g4505 257 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 257 - -
Amo13g4505 257 PANTHER ZINC FINGER PROTEIN JAGGED 1 257 IPR045320 GO:0003700
Amo13g4505 257 MobiDBLite consensus disorder prediction 78 96 - -
Amo13g4505 257 Gene3D Classic Zinc Finger 84 150 - -
Amo13g4505 257 SUPERFAMILY beta-beta-alpha zinc fingers 102 131 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4505 Amo-Chr13 141684586 141687605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4505 102 257 C2H2 Transcription Factor Family AT1G66140 51.913 6.21e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g4505 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4505 - - gmx:100794851 350.517