Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4486 ATGGGAAGGCAACCATGCTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAAGACAAGAAGCTGATCAACTTCATCCTCACAAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTTGCAGGCTTGTTAAGGTGTGGTAAAAGTTGTAGGCTTCGGTGGACAAATTACCTCAGGCCAGACTTGAAAAGAGGCCTTCTATCAGAATATGAGGAGAAAATGGTCATTGACCTCCATGCTCAATTAGGCAACAGGTGGTCTAAGATTGCTTCACATCTGCCTGGAAGAACTGATAATGAGATCAAGAATCATTGGAACACCCACATCAAGAAAAAGCTCAAGAAATTAGGAATTGATCCTGTCACACACAAGCCACTCTCTAATAATACCACTCACCAAAATCAAATCAAACCAGAACAACCACCACTTCAAGAGCAAGAACAAGATCATCATGAACCTGAAATTAAGGAGGCAGAGAAGCCTGAGGCAGAGGATCAATTCATGACCCCACTGTTTGAATCAATGGACACAATAATGATGAATGGTTTCTGTACAGATGAAGTTCCAATTTTAGAACCTGATGAGATCCTTGCTCCATGTGCTGACCTTCTTCTCTCAGATTCTGAGTGGTCCAATGACAATAACAACAACAACTATAGCAGCATGGCCTTATGGGATGATGATGACTTCATTAGCAGTTTGGATATGCTTCTTAATGATGATTATTATGACAGTGACAGAAAACAGCAGCAGCAACCTTTTGATGCTTCACTGAATCAGTACCCAAGAATGATCATGGATTCATCAGAATCTTGGGCTTATGGCTTGTTTTGA 843 0.4199 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKLGIDPVTHKPLSNNTTHQNQIKPEQPPLQEQEQDHHEPEIKEAEKPEAEDQFMTPLFESMDTIMMNGFCTDEVPILEPDEILAPCADLLLSDSEWSNDNNNNNYSSMALWDDDDFISSLDMLLNDDYYDSDRKQQQQPFDASLNQYPRMIMDSSESWAYGLF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4486 280 SMART sant 66 114 IPR001005 -
Amo13g4486 280 SMART sant 13 63 IPR001005 -
Amo13g4486 280 MobiDBLite consensus disorder prediction 146 168 - -
Amo13g4486 280 Gene3D - 70 165 - -
Amo13g4486 280 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 236 - -
Amo13g4486 280 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo13g4486 280 CDD SANT 16 61 IPR001005 -
Amo13g4486 280 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 1 236 - -
Amo13g4486 280 MobiDBLite consensus disorder prediction 123 168 - -
Amo13g4486 280 Gene3D - 11 67 - -
Amo13g4486 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo13g4486 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo13g4486 280 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo13g4486 280 CDD SANT 74 112 IPR001005 -
Amo13g4486 280 MobiDBLite consensus disorder prediction 126 145 - -
Amo13g4486 280 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo13g4486 280 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Amo13g4486 280 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4486 Amo-Chr13 141216620 141217837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4486 1 244 MYB Transcription Factor Family AT1G66230 56.338 1.09e-96 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g4486 Myb_DNA-binding 7.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4486 K09422 - gmx:100803624 372.474