Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4483 ATGGCATCTTCCTTAGACATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGGGAGAGCTAGAGGACGTGGTAGAGCCCGTTCTGGCCGTGGAGCAAGCGGGACTCTTGGTGGTGGGAGAATGAATGGTACTGTTAATGGTAGAAGAATGATGACTGGTGCTGTTAGTGCTGGAAGAATGACTGGTGCTGCTCGCAGAGGTCCTCTAATGGTTAATGCTCGGCCATCGTCTTATGCTATCGCCAAGTCCATTCGCAGAGCCAGGCCTTTTCCATGGCAGCATGATTTATTTGAAGATAGCCTTCGAGCTGCTGGCATACAAGGAATTGAAGTTGGCACCAAGTTGTATGTGTCGAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCGCTGAGCTTGGAGAGTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGGCATCAAAGTGGTTCTGCAGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAACAATGTCCTTTTGGATGGAAAACCTATGAAGATTGAGATTGTTGGTGCCAATGCAGAGTTACCTGTAACGGCTCGTGTGAATGTCACTGAAGTTAATGGGCAGAGGAAACGGACTGTTGTGATGGCGCCAAGAGGAGGGCGAGGTGGAGGTCCTGCTGTCCCTAATCGTGGTGCTGGCATTGGTGCTGGTTGGGGACATCGTGGCGGCCCCCCAAGGAGTGGGAATGGACGAGGTCGAGGTCGGGGGCGTGGCAGGGCCGGCGTCCGAGGTCGTGGGAAAAAGGATGCAGTTGAGAAGTCAGCCGAGCAACTTGATAAAGAATTGGAGAACTATCATGCTGATGCCATGCAGTTCTGA 885 0.4927 MASSLDMSLDDRIKNRSNRGRARGRGRARSGRGASGTLGGGRMNGTVNGRRMMTGAVSAGRMTGAARRGPLMVNARPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFAELGELKRYAVHYDKNGHQSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPVTARVNVTEVNGQRKRTVVMAPRGGRGGGPAVPNRGAGIGAGWGHRGGPPRSGNGRGRGRGRGRAGVRGRGKKDAVEKSAEQLDKELENYHADAMQF* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4483 294 Coils Coil 270 290 - -
Amo13g4483 294 PANTHER THO COMPLEX SUBUNIT 4C 1 293 - -
Amo13g4483 294 SMART rrm1_1 116 188 IPR000504 GO:0003723
Amo13g4483 294 Gene3D - 111 191 IPR012677 -
Amo13g4483 294 SUPERFAMILY RNA-binding domain, RBD 109 189 IPR035979 GO:0003676
Amo13g4483 294 SMART FoP_duplication_2 219 293 IPR025715 -
Amo13g4483 294 MobiDBLite consensus disorder prediction 217 294 - -
Amo13g4483 294 MobiDBLite consensus disorder prediction 265 288 - -
Amo13g4483 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Amo13g4483 294 Pfam C-terminal duplication domain of Friend of PRMT1 235 289 IPR025715 -
Amo13g4483 294 CDD RRM_THOC4 115 189 - -
Amo13g4483 294 MobiDBLite consensus disorder prediction 1 49 - -
Amo13g4483 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Amo13g4483 294 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4483 Amo-Chr13 141159244 141163542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4483 114 189 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 3.29e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4483 K12881 - gmx:100801491 383.259