Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4445 ATGAAGCAAGGAAGTATGAGTCCTAAAACAAGAATGGGAATTACTATTACTATTCTCATCTTCACCCAAATCTTGCTCTGCATTCATGCTACTGAAACAGATATATTCTGTTTAAAATCCATCAAGGATTCCTTGGAAGATCCATATAATTTCTTAGCTAGCTGGGACTTCAACAACAAAACCGAAGGTGTYATTTGTAATTTTGTGGGTGTTWKYTGCTGGAATCCCAATGAAAACAGAGTGCTAGGAATCGACCTGTCAAACATGAGGCTGAAGGGCCAGTTTCCGCGGGGACTTCATAATTGCACTTCATTAACTGCCTTAGACCTTTCATCAAACAGCTTATGGGCACCTCTCCCCTCTGATATTCATACATTACTCCCCTTCGCTGTCTCCATTGATCTCTCCAACAACCACTTCAGCGGACAGATTCCACCGTCTCTCGCTAGCTGCACTTACCTGAATGTTCTCAAGCTTGATGGCAACATGCTCAGTGGTGGAATCCCGGGTCAACTTGCGGCGCTTCCCAGGATCCGAACACTGTCTTTTGACAACAATAAGTTGTCAGGGGAAGTGCCTAACTTGGCATATGGTTCGGTAAGTGTTAGCTATGCTAAGAATAGGGGGCTTTGTGGAGGGCCCTTGGAACCATGCTCCTTCGACGGAGGAGGAGGGCTTATTATCATGGACCAATCCTTCAAGGATGGCCTTTTTGTTGGTTTTGCATCATCCTTTAGTTTTCTTCTTGCGTGCATCTTTTTCCTTTCAAATAGTTACTGGGCAAAATTATTGAAGTGGATCAACCACAATAAAGGTGTAGAACTAGTCAAATATGTGTGTTCCATCGTCACAGAGAGAAAGCTCGGACTAGAAGCTGATCAGATGCCTCAATTGCAGGAGAAAGGAAGCCAAAAGATAGCTCTACTACTGGAAAGATTAACATCCACTATGAAGTTTGAAGAACTAAATGATGCAACAGACGGATTTTCTATAAACAATGCAATTGGGTTTGGAAAGATGGGAATAATGTACAAGGGAAAATTGGCTAACGGTTGGCACCTAGCCATTAAGAAACTAACTGATTCTCAACAATTTGGGAGACAAGTTCTTATAGAAATAAGGATTCTAGGTAAGCTCCGACACAGAAACATAGTTCCCCTGCTTGGGTTCTGCATAGAAAACGATGAAAGGATTCTGGTGTACCCGTATTTCTCAAATGGAAGACTCTCGAAATGGTTGCACCCTTTGGAAACTGAGGCTATGATATTGACATGGCCACAGAGGATTAACATTGCACTAGGTGTGGCTAGAGCCTTATCTTGGCTCCATCATTTATGCAATCTGCATGTGGTGCACTTGAATATTTGTTCACGGAGTATCTTGCTAGATAAGAATTTYGAACCCAAGTTATCCAATTTTGGAGATGCCAAGTTTTTGAACCCCAACAACCATGAGAGTCTAGGCATGTCGTTTTATATCAAGGATGGGAAGAAGGATGTTTATGATTTTGGTAATGTAATTTTTGAGTTGGTCACGGGAAAATTATATGAGGAATTGGTGGAGAGTTCATGTAACAATGCTAATCTATCTCCTAATCCTTCAAGTTTTTATAGTGCAATTGATAAGTTTATTATTGGTGAAGGGTTTGAAAGTGAAGCGTTTATGCTCATGAAGATTGCTTGCGAGTGTGTTCAGCCTTTTCCAGAACAAAGACCAACAATGGTTCAAGTCTACAACAAAATGAGCAGTCTATGGGAAGAGAGACATGAACTTTGCGGTGATTCTAACACTTGCACGCACGCGATCAGAGAAGTCACAAAGATATCAATACAAAGAATGGGTATTATTCTCCTGTTGTGTTTCTTGCTCAGCACCGTTTTCACACCAGGCCATGGTACTGAAACAGATATATTCTGTTTGAAATCCGTGAAAGAATCGTTGGAAGATCCATATAACTACTTACAATCCTGGGACTTCAGCAACAACACCGAAGGTTTCATATGTAAACTTAGTGGCGTTGAGTGCTGGCATCCCGATGAAAACAGAGTGCTTAATCTGAAACTATCGAACATGGGTCTCAAGGGGGAGTTCCCGCGGGGCATTCGGAATTGTTCATCTTTGACTGGCTTGGACCTTTCTATAAACCGCTTATCGGGACCCATCCCTTCTGATATATCAACAATCCTCACTTATGCTACCACCCTTGATCTCTCAAGTAACATGTTCGGCGGAGAGATTCCACCATCTTTGGCTAACTGCACTTACCTGAATACTCTCAAGCTTGATCACAACAAGCTCAGTGGTGGAATCCCACCAGAATTTGCGAGTCTCGGAAGGCTTAAGACACTGTCTTTGACCAATAATGAGTTGTCAGGACCAGTACCTAACTTCCCAAGTGGTCGAAGTGTTAGCTATGGTAATAATAGAGGGCTTTGTGGAGGGCCTTCTTTGTTACCGTGCTCCTCTCACAAGCACCTCCACCTGCACCTGCACCTAACATTTAAGGTTGCCCTCCTTCTTGCTTTTGTTTTATTCTTCATCGTTTGTGTTGTTGTGCGCACCATGTGCTTCCGTGCTTCTTCTAGGACTAGGAAACACATGAAGCCCGCCAAATTAGATACATTGAAATATGTTTGTTCCCTCGTAAGGTGGAAGATGCGACCGCTTGTTTATCACATACGCCAACTGCTACCTCTGCACTTGCAACACAATGGAACCCAACAGATAGCGCTACTAGTGGAAAGATTGACATCCACTATGAACTTAGAAGAACTCAATGATGCTACCGAAAGCTTTTCTATTGACAACGCCATAGGGGTGGGCAAAATGGGAATAATGTATGAGGGAGTTCTAGCTAATGGTTGGCACCTTGCCGTTAAGAGGCTATCCGATTCTCAACTGTTTGAGAGACAAGTTCTTTTAGAGATAAGGATTCTTGGGAAGCTTCAACACAGAAACATAGTTCCTCTGCTTGGATTCTGTGTGGATAATAAGGAAAGGATTCTGGTGTACCAATATACATCAAATGGAAGACTTTCCAAATGGTTGCATCCTSTGGAATCTGAGGCTSTGATATTGACATGGYCACAGAGGATCAAGATTGCACTTGGTATGGCTAGAGCCTTATCTTGGCTTCATCACACTTGCAATTGGCATGTTGTCCATCTTAATGTATCTTCTGAGTGTGTCTTGCTTGATGAGAGTTTTGAACCAAAACTATCAAATTTTGGAGAGGCTAAGTTTATGAACCCCAACAAACATGATGATCTAGGCATGACATTTTATGTAGAGGATGGCAAGAAGGATGTTTTTGATCTTGGTAGTGTGCTTCTTGAACTGGTCACCGGAAAAACATTGAAGGAATTGGTGTGTTTATCTAACAATGCTGACTTATCTGGTGACCCTTCAACTATTTATGATGCAATTGACAAGTCTCTTATTGGGAAAGGATTTGAAAATGAAGTGTTTACTCTTGTCAAAGTTGCTTGTGAGTGTATTCAGCCTTTTCCAGATGACAGGCCAACAATGCTTCAAGTTTACAACAGCATGACCAATGTATGGGAAGAGAATCATGAGTTTATTGATCATTCTAACATGCTTGCTAGGGAATTAGAAATTGTTTCTGCTACTACGAATAGTGGTGAAATTGTTGAGTTATAA 3660 0.4169 MKQGSMSPKTRMGITITILIFTQILLCIHATETDIFCLKSIKDSLEDPYNFLASWDFNNKTEGVICNFVGVXCWNPNENRVLGIDLSNMRLKGQFPRGLHNCTSLTALDLSSNSLWAPLPSDIHTLLPFAVSIDLSNNHFSGQIPPSLASCTYLNVLKLDGNMLSGGIPGQLAALPRIRTLSFDNNKLSGEVPNLAYGSVSVSYAKNRGLCGGPLEPCSFDGGGGLIIMDQSFKDGLFVGFASSFSFLLACIFFLSNSYWAKLLKWINHNKGVELVKYVCSIVTERKLGLEADQMPQLQEKGSQKIALLLERLTSTMKFEELNDATDGFSINNAIGFGKMGIMYKGKLANGWHLAIKKLTDSQQFGRQVLIEIRILGKLRHRNIVPLLGFCIENDERILVYPYFSNGRLSKWLHPLETEAMILTWPQRINIALGVARALSWLHHLCNLHVVHLNICSRSILLDKNFEPKLSNFGDAKFLNPNNHESLGMSFYIKDGKKDVYDFGNVIFELVTGKLYEELVESSCNNANLSPNPSSFYSAIDKFIIGEGFESEAFMLMKIACECVQPFPEQRPTMVQVYNKMSSLWEERHELCGDSNTCTHAIREVTKISIQRMGIILLLCFLLSTVFTPGHGTETDIFCLKSVKESLEDPYNYLQSWDFSNNTEGFICKLSGVECWHPDENRVLNLKLSNMGLKGEFPRGIRNCSSLTGLDLSINRLSGPIPSDISTILTYATTLDLSSNMFGGEIPPSLANCTYLNTLKLDHNKLSGGIPPEFASLGRLKTLSLTNNELSGPVPNFPSGRSVSYGNNRGLCGGPSLLPCSSHKHLHLHLHLTFKVALLLAFVLFFIVCVVVRTMCFRASSRTRKHMKPAKLDTLKYVCSLVRWKMRPLVYHIRQLLPLHLQHNGTQQIALLVERLTSTMNLEELNDATESFSIDNAIGVGKMGIMYEGVLANGWHLAVKRLSDSQLFERQVLLEIRILGKLQHRNIVPLLGFCVDNKERILVYQYTSNGRLSKWLHPXESEAXILTWXQRIKIALGMARALSWLHHTCNWHVVHLNVSSECVLLDESFEPKLSNFGEAKFMNPNKHDDLGMTFYVEDGKKDVFDLGSVLLELVTGKTLKELVCLSNNADLSGDPSTIYDAIDKSLIGKGFENEVFTLVKVACECIQPFPDDRPTMLQVYNSMTNVWEENHEFIDHSNMLARELEIVSATTNSGEIVEL* 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4445 1219 ProSiteProfiles Protein kinase domain profile. 932 1194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4445 1219 Gene3D Transferase(Phosphotransferase) domain 1 404 603 - -
Amo13g4445 1219 Gene3D Transferase(Phosphotransferase) domain 1 1007 1204 - -
Amo13g4445 1219 PANTHER RECEPTOR-LIKE PROTEIN 55 16 584 - -
Amo13g4445 1219 Pfam Protein kinase domain 331 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4445 1219 Pfam Protein kinase domain 934 1181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4445 1219 SUPERFAMILY Protein kinase-like (PK-like) 311 579 IPR011009 -
Amo13g4445 1219 SUPERFAMILY Protein kinase-like (PK-like) 914 1182 IPR011009 -
Amo13g4445 1219 Gene3D Phosphorylase Kinase; domain 1 896 1006 - -
Amo13g4445 1219 Gene3D Phosphorylase Kinase; domain 1 291 403 - -
Amo13g4445 1219 Pfam Leucine rich repeat N-terminal domain 635 676 IPR013210 -
Amo13g4445 1219 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Amo13g4445 1219 PANTHER RECEPTOR-LIKE PROTEIN 55 616 1186 - -
Amo13g4445 1219 SUPERFAMILY L domain-like 32 461 - -
Amo13g4445 1219 SUPERFAMILY L domain-like 634 922 - -
Amo13g4445 1219 Gene3D Ribonuclease Inhibitor 32 219 IPR032675 -
Amo13g4445 1219 Gene3D Ribonuclease Inhibitor 634 822 IPR032675 -
Amo13g4445 1219 ProSiteProfiles Protein kinase domain profile. 329 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4445 1219 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 616 1186 - -
Amo13g4445 1219 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 16 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4445 Amo-Chr13 140463898 140471097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4445 24 588 Receptor kinase-like Gene Family AT3G28450 36.318 5.75e-99 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Amo13g4445 Pkinase 1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4445 - - aip:107637285 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4445 13 140463898 140471097 Amo20g0728 20 10579964 10582605 PCT
Amo13g4445 13 140463898 140471097 Amo10g0025 10 334836 337371 PCT
Amo20g0728 20 10579964 10582605 Amo13g4445 13 140463898 140471097 PCT
Amo10g0025 10 334836 337371 Amo13g4445 13 140463898 140471097 PCT