Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4433 ATGGCTGACGATGAGGATTTCCAAGGTGCAGCAGGGATTTGCGGTGAGAACTGGTGGAGGAGTATTGATTCAACAAGGAGTGTGTTCCCTCCTCTAACCTCATCATCATCACCTTGTTCCGTGGCACCACCCACCGACACTAGAACTTGGCCAAGTAGTGATGATCATCATCATTGTTTCATGGATTTGAAGGCACCGGCGTGTGATATTATTAGTAACAATAATAATAATAATTACCATATGGGTTTTCATGATGCACAAGAGAAGCCACACAACAACAAGACTAGTACTAATGAATCACAAAGTGGAAGCATCTTGATCGATTCAACCTTCCAAATGATGGGTTTTGGCTTGTCTTCACCCAATTGGGATCATCAATCTCTGTTAGAGAATAATAATTCACAAATAATCCAAAAGGATTATTGGAGCAGAAAGAACTTTGGAACCCAACAACAACAAGTTTCAAGTACCATGGATGTTTTCAAGCGCATGAACAACCAAGAATTTTCCTCATCAACTTATGGTTACCCGTCATCAACACTGATTCAAACATTATATGATCCACAGCAGCAGCCACAGCGCTCATCATCATCATCATCATCATCACTTTTCACCAACCGTTCCATGTCCTATTCATCATCTTCTACAGTGAATTATCATCATGCCTCCAATGAAGTGTCACTGTCACCAATCACATGGCCTAAACTCTTTTCTTCTTCTTCTTCTTCATCATCATCTTCTTCTTTATCACTACTTCCCCCAATGGCAAAGCACCCTGACAATAACAATATTGGACTTCACTTTTCCAACAACAACACCCCTTTCTGGAACGCTTCCTCCGACGCACTTCACGACATTAGAGCAGGTGCTTTTCCTTTTGAAGAAGAAGACAACAAACCCAATTCCCCCATTATTCTACTCAACAAGCTTAAGAGCGAAGAATTGTGTGTGGACTCGGTAAAGAAAAATAATAATGTTTGCTCATCACCACCTCCATTCAAAAGGGCAAGAATTGAAACTCCACCCCCTTTACCAACTTTTAAGGTTCGGAAAGAGAAGTTAGGGGACCGAGTTACTGCTCTTCAGCAACTGGTTTCACCTTTCGGAAAGACCGACACTGCATCCGTTCTCCACGAAGCTATTGAGTACATCAAGTTTCTTCACGATCAAGTCAGCGTTTTGAGCACTCCATACATGAAGAGTGGAGCTTCCATTCAACCCAATCAGGAATGTAATAATTGGAAAGAGTCACCAGAAGTGGCAAAACGAGATTTGAGAAGCCGAGGGCTATGTTTGGTACCAATTTCAAGCACATTCCCGGTTGCTACGGAGGTGAGTGCTGATTTCTGGACGCCAACATTGTCATTCGGAGGAGCACTTCTAAGATAG 1389 0.4233 MADDEDFQGAAGICGENWWRSIDSTRSVFPPLTSSSSPCSVAPPTDTRTWPSSDDHHHCFMDLKAPACDIISNNNNNNYHMGFHDAQEKPHNNKTSTNESQSGSILIDSTFQMMGFGLSSPNWDHQSLLENNNSQIIQKDYWSRKNFGTQQQQVSSTMDVFKRMNNQEFSSSTYGYPSSTLIQTLYDPQQQPQRSSSSSSSSLFTNRSMSYSSSSTVNYHHASNEVSLSPITWPKLFSSSSSSSSSSSLSLLPPMAKHPDNNNIGLHFSNNNTPFWNASSDALHDIRAGAFPFEEEDNKPNSPIILLNKLKSEELCVDSVKKNNNVCSSPPPFKRARIETPPPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKSGASIQPNQECNNWKESPEVAKRDLRSRGLCLVPISSTFPVATEVSADFWTPTLSFGGALLR* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4433 462 MobiDBLite consensus disorder prediction 31 49 - -
Amo13g4433 462 CDD bHLH_AtbHLH_like 344 395 IPR045239 -
Amo13g4433 462 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 444 - -
Amo13g4433 462 PANTHER TRANSCRIPTION FACTOR BHLH103 48 444 - -
Amo13g4433 462 MobiDBLite consensus disorder prediction 31 51 - -
Amo13g4433 462 Gene3D - 348 408 IPR036638 GO:0046983
Amo13g4433 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 403 IPR036638 GO:0046983
Amo13g4433 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4433 Amo-Chr13 140351632 140354944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4433 5 462 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 37.975 2.71e-60 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4433 - - ahf:112791361 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4433 13 140351632 140354944 Amo20g0774 20 11182955 11185772 PCT
Amo13g4433 13 140351632 140354944 Amo10g0067 10 710345 713015 PCT
Amo20g0774 20 11182955 11185772 Amo13g4433 13 140351632 140354944 PCT
Amo10g0067 10 710345 713015 Amo13g4433 13 140351632 140354944 PCT