Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4428 ATGACTCCGAACTTTATCTTCAACATTAGCTTTGTTAGCGACACAAAGGAAGTTAGCATAATGTACGGAGTGAAGGACCCCAACGTGCTCTCCAGGATGGTGCTGGACGAGACGGGTCACGTGAGGAGGATGACGTGGCAAGCTCACGAGCTAAGATGGTTCGAATTCTGGTACGCGCCCAAGGAGCAGTGTGATAACTACAGGCAGTGCGGCTCAAACACCAACTGTGACCCGTATGAGGAGGACAAGTTCATGTGCAAGTGCCTGCCGGGGTTCGAGCCCAGGTTCGAGAGAGAGTGGTACCTTAGAGATGGGTCAGGTGGGTGCGTGAGGAAGGCTAACGTGTCCACGTGTCGAAGCGGGGAGGGGTTTGTTGAAGTGGCGCGTGTGAAGGTGCCGGATACTTCGAAGGCGCGTGTAGATGCGGGATTGAGCATGAAGGATTGCAGGGTGAAGTGTTTGGGAGACTGCTCGTGTGCGGCGTATACGAGTGCCAACGAGACTACTCACACTGGCTGCGTTACGTGGCATGCTAACATGGAGGATACTAGGACCTACACACAAGTCGGCCAAAATTTGTTCGTACGTGTCGCTGCAATTGAATTAGCTCAATATGCGAAAAATCGCCATGGTTCTCTAGGCAAGAAGGGGATGCTAGCACTTTCAGGAGTTTCAGCTTTCTTATTCTTGTTTCTGGTGGTCATGTTGGGCTATTGCTTTCTGAAATCCAAGAAACAAGGGAGAAGAACGGATCGCAAGTATTCATTTCGTCTTAGTTTTGAGGACTCTACCAATCTACAAGAATTTGATAGTACGCAAAATTCAGATTTACCATTCTTTGATCTAAGCTCAATAGCTGCTGCAACAGATAATTTCTCCCCTGACAATAAACTTGGTCAAGGTGGATTTGGTTCTGTATATAAGGGGCTATTGAATAATGGAAAGGAAATTGCAGTGAAGAGATTGTCTAAAAATTCTGGACAGGGCATAGACGAGTTTAAAAATGAAGTTGTTTTGATTTCAAAGCTTCAACATCGAAATCTTGTGAGAATCTTAGGTTGTTGCATTCAAGGAGATGAGAAGATGCTAATATACGAATACTTGCCTAACAAAAGCTTAGATTCTTTTATTTTTGACGAATCTAAAAAGTCACAGTTAGATTGGAAGAAACGATTTCAAATTATATGTGGAATTGCTAGAGGAATGTTATATCTTCATCATGATTCACGACTAAGAATCATTCATAGAGATTTAAAGACTAGCAATGTCTTGTTAGATTCTGAATTGAATCCTAAAATTGCCGATTTTGGAATGGCAAGAATATTTGGCGGAAATCAAGTTGAAGCAAATACTAACCGTGTTGTTGGAACCTATGGATATATGTCACCGGAATATGCTATGGAAGGACAATTTTCAATTAAGTCTGATGTATATAGTTTTGGAGTTTTGCTCCTAGAAATCATTACGGGCAGAAAGAATAGTGGTCAATACGACGACATTACTACGACAAATTTAGTCGGCCATATATGGGATCTGTGGAAAGATGGGAGAGCCATGGAGATTGTTGATGAATGTTTATTGGAAGAGTCGTCATGTTGTGAGCATGAAGTCCAAAGATGCATACAAATTGGACTTTTGTGCGTTCAAGATTACCCCACAGACAGGCCATCAATGGCAGCAGTTGTTTCCATGATGGGAAATGACTCAGCCCTTCCTTCTCCAAAACATCCAGCATTTATTTTCAAGAGGGGCAAAAATTATGAGAGTTCAGATCCATCGACCAGTGACGGTGTTTATTCAGTCAACGACGTAAGTATGACCATCATTGAAGCTCGCTAA 1839 0.4296 MTPNFIFNISFVSDTKEVSIMYGVKDPNVLSRMVLDETGHVRRMTWQAHELRWFEFWYAPKEQCDNYRQCGSNTNCDPYEEDKFMCKCLPGFEPRFEREWYLRDGSGGCVRKANVSTCRSGEGFVEVARVKVPDTSKARVDAGLSMKDCRVKCLGDCSCAAYTSANETTHTGCVTWHANMEDTRTYTQVGQNLFVRVAAIELAQYAKNRHGSLGKKGMLALSGVSAFLFLFLVVMLGYCFLKSKKQGRRTDRKYSFRLSFEDSTNLQEFDSTQNSDLPFFDLSSIAAATDNFSPDNKLGQGGFGSVYKGLLNNGKEIAVKRLSKNSGQGIDEFKNEVVLISKLQHRNLVRILGCCIQGDEKMLIYEYLPNKSLDSFIFDESKKSQLDWKKRFQIICGIARGMLYLHHDSRLRIIHRDLKTSNVLLDSELNPKIADFGMARIFGGNQVEANTNRVVGTYGYMSPEYAMEGQFSIKSDVYSFGVLLLEIITGRKNSGQYDDITTTNLVGHIWDLWKDGRAMEIVDECLLEESSCCEHEVQRCIQIGLLCVQDYPTDRPSMAAVVSMMGNDSALPSPKHPAFIFKRGKNYESSDPSTSDGVYSVNDVSMTIIEAR* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4428 612 Pfam S-locus glycoprotein domain 4 95 IPR000858 GO:0048544
Amo13g4428 612 Gene3D Phosphorylase Kinase; domain 1 253 367 - -
Amo13g4428 612 SUPERFAMILY Protein kinase-like (PK-like) 273 564 IPR011009 -
Amo13g4428 612 Pfam PAN-like domain 118 182 IPR003609 -
Amo13g4428 612 ProSiteProfiles PAN/Apple domain profile. 118 198 IPR003609 -
Amo13g4428 612 SMART serkin_6 292 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4428 612 ProSiteProfiles Protein kinase domain profile. 292 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4428 612 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 607 - -
Amo13g4428 612 Pfam Protein tyrosine and serine/threonine kinase 295 564 IPR001245 GO:0004672|GO:0006468
Amo13g4428 612 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Amo13g4428 612 CDD STKc_IRAK 298 565 - -
Amo13g4428 612 Gene3D Transferase(Phosphotransferase) domain 1 368 572 - -
Amo13g4428 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Amo13g4428 612 SMART ntp_6 119 197 IPR003609 -
Amo13g4428 612 Pfam Domain of unknown function (DUF3403) 567 612 IPR021820 GO:0004674
Amo13g4428 612 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 4 607 - -
Amo13g4428 612 CDD PAN_AP_plant 116 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4428 Amo-Chr13 140317123 140319859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4428 232 612 Receptor kinase-like Gene Family AT4G23150 53.109 7.74e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g4428 PK_Tyr_Ser-Thr 7.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4428 - - gmx:100812814 999.964