Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4423 ATGTTGGAGAGGGAGACAGTGCACAGAGGTTCTCTGGAAAGGAGTCAGGATTTGTTGATGACTGAAGTGGTCTTTTCAAGCAACAGAGAACAGTCTAGTGAAAGGAAAATTGATGACTTAGAGTTGCCATTGTTTGATTTTAATACCTTAACAATGGCTACAAAGAACTTCTCTGAAGAGAATAAACTTGGACAAGGAGGATTTGGTGTTGTTTACAAAGGCAGGTTGATGGAAGGCCAGGAAATCGCTGTGAAGAGGCTATCAAAAAATTCTGGTCAAGGAGTTGAAGAGTTTAAGAATGAGGTCAAACTGATTGTCAAACTTCAACACCGGAATCTTGTTCGGCTGCTTGGTTGCAGCATTCAAATGGATGAAAAGATGCTTGTGTATGAGTACTTGGAAAATAGAAGCCTTGATGGGATTTTATTTGACAAGGCAAAAAGCTCCTCATTGGATTGGCCAAGGCGCTTCAGCATTATTTGTGGTATTGCTAGAGGACTTCTTTATTTGCACCATGATTCCAGATTTAAGATTATCCATAGAGATCTCAAGGCAAGCAACATTCTACTTGACAAAGAAATGAATCCAAAAATATCAGATTTTGGAATGGCTAGAATTTTTAGCACAAATCAAACAGAAGCTAATACAATGAGAGTTGTTGGAACATATGGTTACATGTCTCCTGAATATGCTATGGATGGGATCTTTTCAGTAAAATCTGATGTTTTTAGTTTTGGGGTATTAGTGTTGGAGATCATTACTGGAAAAAAGAATAGAGGATTCTACTATGCAAATGCTGAACTGAATCTTCTAGGGCATGCATGGAAGCAATGGAATGAAGGAAATGCATTGGAATTAATTGATTCGTCAATTGACAATTCATATTCATCATCTGAGGTTCTTAGGTGCGTACAAGTGGGGCTCTTATGTGTGCAAGAGCGTGCAGAAGACAGGCCAACAATGTCTTCAGTGGTCTTGATGCTAAGTAGTGAAACTGCATCAATGCCGCAGCCCAAAAACCCTGGGTTTTGCCTGGGAAGGAATCCAATGGAAACTGATTCTTCTTCAAGTAAGCAAGATGAAACATTCACTGTGAACCAAGTCACAGTCACAATGCTAAATGCCAGGTAG 1131 0.3952 MLERETVHRGSLERSQDLLMTEVVFSSNREQSSERKIDDLELPLFDFNTLTMATKNFSEENKLGQGGFGVVYKGRLMEGQEIAVKRLSKNSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLVYEYLENRSLDGILFDKAKSSSLDWPRRFSIICGIARGLLYLHHDSRFKIIHRDLKASNILLDKEMNPKISDFGMARIFSTNQTEANTMRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVLEIITGKKNRGFYYANAELNLLGHAWKQWNEGNALELIDSSIDNSYSSSEVLRCVQVGLLCVQERAEDRPTMSSVVLMLSSETASMPQPKNPGFCLGRNPMETDSSSSKQDETFTVNQVTVTMLNAR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4423 376 Pfam Receptor serine/threonine kinase 13 47 IPR022126 GO:0004674
Amo13g4423 376 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Amo13g4423 376 SUPERFAMILY Protein kinase-like (PK-like) 37 328 IPR011009 -
Amo13g4423 376 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 375 - -
Amo13g4423 376 CDD STKc_IRAK 63 328 - -
Amo13g4423 376 PANTHER - 16 375 - -
Amo13g4423 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Amo13g4423 376 Gene3D Phosphorylase Kinase; domain 1 30 132 - -
Amo13g4423 376 SMART serkin_6 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4423 376 Gene3D Transferase(Phosphotransferase) domain 1 133 340 - -
Amo13g4423 376 Pfam Protein tyrosine and serine/threonine kinase 60 326 IPR001245 GO:0004672|GO:0006468
Amo13g4423 376 Pfam Domain of unknown function (DUF3403) 330 376 IPR021820 GO:0004674
Amo13g4423 376 ProSiteProfiles Protein kinase domain profile. 57 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4423 Amo-Chr13 140293239 140296054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4423 45 376 Receptor kinase-like Gene Family AT4G11530 56.973 8.77e-139 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g4423 PK_Tyr_Ser-Thr 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4423 - - gmx:106799702 647.121