Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4422 ATGCTGAATTGCTTTGGAATAAGTTATGTGCAAGATTTTGTAATGCATGCTCTGAAGGAGGCACCCGCCGGAACTTCCAACCTCCTCCGGCGAGCAGCGGAGCTCATTGCCACCGTGCTCTCCCTCTCCCTCTCGATCAGGGCCTTCGCCACCAAATGGCAACTCATCCGGACCAAGCTCGAGGAGCTCCACTCCGGCCTAATCGCCGCCGAGAACTGCGACTCCGGCGAGAACCCACAGCTCACGGGCATCCTCCCATCGGTGATTTCGACCGCCGGAGAGTGCCGCGACTTGGCGCGCCGTTGCTCCGACCTCTCCTACAGCGGGAAGCTCCTTATGCAGAGCGATTTGGACGTGGCGATCGCAAAGCTGGACGGCCACGTCAGCACCCTCTCGGAGATTTACAAAAAGGGAATATTGGCGAATGGGTCTGCCCTCGTCGTTTCAAAACCGAGTCTTGGCGCTTCAAGAGAAGACATAAGGTTCTACGTGAGGGACCTATTAACGAGGATGAAGATTGGGGATTTGGGTATGAAGAAAGTGGCTCTCAGGAACCTGTACGAGGTTGTCGTCGAGGATGAGAGGTACGTTAAGGCCGTTGTGGACGTTGGTGACGTGGTTCATGTGCTGGTTGGGTTTCTTGGTTCAACTGAATCGGGACTCCAAGAGGAGAGTGCAAAGGTTGTTTCTGTGATTGCAGGATTTGGTTGCTACAAGGGCAATTTGGTAAATTCAGGAGTGGTTGCGCCGTTGGTTAGGGTGCTGGATTGTGGGAGCGAAGAAGGGAAAGTTGCTGCAGCGAGGTGTTTGGTGAAGCTCACTGAGAATTCTGATAACGCTTGGTGTGTTTCTGCACATGGTGGTGTCACTGCGTTGCTTAGAATTTGTGATGGTGATGGTGGTGGTTGTGACGGAGATTTGATTGGTCATGCGTGCGGTGTGTTAAGCAATCTTGTTAGTGTTGAAGAGATTAAGAGGTTTATGATTGAGGAAGGTGCGGTTTCTACGTTTATAAGGCTTGTGAGGTCCAGGGATGAAGCCATTCAAGTGAATTCAATAGGCTTCATTCAGAACATTGCCTCTGGTGATGAATTGGTTAAGCAGATGGTGATTAGAGAAGGTGGAATCCGTGCTCTGTTGCGTGTTCTTGATCCTAAATGGCCCTGTTCTTACAAAACAAGGGAGATTTCAATAAGGGCTATTGAGAATTTGTTTTTCTCTCCGCTTAGCTCTGTGAGTGCTTTGATTAGTTACGGTTTTGTGGATAGTTTGCTGTATTATGTTCGAAATGGCGAGGTTTCGATTCAAGAATTGGCGCTGAAAGTGGCATTTCGATTGTCTGGAACGTCCGAGGAGGCGAAGAAATCAATGGGGGATGCAGGTTTCATGGCTGAGCTTGTGAAATTCCTGAATGCGAAATCGTTTGAGGTTCGCGAAATGGCAGCTGAGGCACTCTCTGGGTTGGTTATGTTGCCTAAGAACAGAAAGAGGTTTGTGCAGGATGACCATAACATTGCACTTATCCTTCAATTGCTTGATCCTGAAGAGGGGAATTCAGGTAACAAAAAGCACTTAATCTCAATCTTAATGTCATTGACAAGTTGCAATAGTGGGAGGAAAAAGATTGTTAGTTCTGGTTATGCAAAGAACATTGAGAAGCTTGCAGATGCTCAAGTTTCTTCTGATGCCAAGAAACTTGCAAAGAAGCTATCCACAAACAGGTTCCGCAGCTTGTTCAGTGGAATCTGGCATTCATGA 1758 0.4835 MLNCFGISYVQDFVMHALKEAPAGTSNLLRRAAELIATVLSLSLSIRAFATKWQLIRTKLEELHSGLIAAENCDSGENPQLTGILPSVISTAGECRDLARRCSDLSYSGKLLMQSDLDVAIAKLDGHVSTLSEIYKKGILANGSALVVSKPSLGASREDIRFYVRDLLTRMKIGDLGMKKVALRNLYEVVVEDERYVKAVVDVGDVVHVLVGFLGSTESGLQEESAKVVSVIAGFGCYKGNLVNSGVVAPLVRVLDCGSEEGKVAAARCLVKLTENSDNAWCVSAHGGVTALLRICDGDGGGCDGDLIGHACGVLSNLVSVEEIKRFMIEEGAVSTFIRLVRSRDEAIQVNSIGFIQNIASGDELVKQMVIREGGIRALLRVLDPKWPCSYKTREISIRAIENLFFSPLSSVSALISYGFVDSLLYYVRNGEVSIQELALKVAFRLSGTSEEAKKSMGDAGFMAELVKFLNAKSFEVREMAAEALSGLVMLPKNRKRFVQDDHNIALILQLLDPEEGNSGNKKHLISILMSLTSCNSGRKKIVSSGYAKNIEKLADAQVSSDAKKLAKKLSTNRFRSLFSGIWHS* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4422 585 Pfam Armadillo/beta-catenin-like repeat 323 361 IPR000225 GO:0005515
Amo13g4422 585 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 375 IPR000225 GO:0005515
Amo13g4422 585 SUPERFAMILY ARM repeat 146 558 IPR016024 -
Amo13g4422 585 SMART arm_5 363 406 IPR000225 GO:0005515
Amo13g4422 585 SMART arm_5 193 234 IPR000225 GO:0005515
Amo13g4422 585 SMART arm_5 321 361 IPR000225 GO:0005515
Amo13g4422 585 SMART arm_5 450 490 IPR000225 GO:0005515
Amo13g4422 585 SMART arm_5 235 275 IPR000225 GO:0005515
Amo13g4422 585 SMART arm_5 276 320 IPR000225 GO:0005515
Amo13g4422 585 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 585 - -
Amo13g4422 585 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 585 - -
Amo13g4422 585 Gene3D - 163 574 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4422 Amo-Chr13 140258322 140261861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4422 147 384 U-box Gene Family AT2G23140 26.721 1.44e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4422 - - adu:107480628 1057.74