Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4417 ATGGGAAGAACACCTTGCTGTGAGAAGAATGGGCTGAAGAAGGGGCCATGGACGCCAGAGGAGGATCAGAAGCTCGTTGATTACATTCACAAACATGGCTACGGCAATTGGAGAACGCTCCCTAAGAATGCCGGTATGTATATATACTTGCACACTTTGTTAAATCTGTTTTTTAATTTGTTGACTTATACATATATAGGGTTGCAAAGATGCGGAAAGAGTTGCCGTCTGCGGTGGACAAACTATCTCCGGCCAGATATAAAGCGCGGTCGATTCTCCTTGGAAGAGGAGGAGACCATAATACACCTTCACAGCATTCTTGGAAACAAGTGGTCTGCAATAGCGTCGCGGCTGCCAGGGAGGACAGACAACGAAATAAAGAATTATTGGAATACACACATTAGGAAGAGGCTACTGAGGATGGGAATCGATCCTGTGACACACAGTCCACGCCTAGACCTTCTTGATCTCTCATCTCTCTTTGGTTCATCAATATCACACATCAACAATAACATGCAACACCATCTTAACCCTGAGCTTCTCAAATTGGCCACGTCACTCTTCTCTCATACTAATTCTCTTGACAACAGCCACAACCAAATCATCAGTAGTGATGTTTCCTTGTCTTTCCCTCAAGCAAACTTTCTAGAATCCAATAATAATGTGGACTCAGCATACCCATCAAATCTAATGAATACTAGTGATTATTGGCACGCCCGATAA 723 0.4357 MGRTPCCEKNGLKKGPWTPEEDQKLVDYIHKHGYGNWRTLPKNAGMYIYLHTLLNLFFNLLTYTYIGLQRCGKSCRLRWTNYLRPDIKRGRFSLEEEETIIHLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSLFGSSISHINNNMQHHLNPELLKLATSLFSHTNSLDNSHNQIISSDVSLSFPQANFLESNNNVDSAYPSNLMNTSDYWHAR* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4417 240 Gene3D - 91 138 - -
Amo13g4417 240 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Amo13g4417 240 Gene3D - 11 89 - -
Amo13g4417 240 CDD SANT 16 83 IPR001005 -
Amo13g4417 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Amo13g4417 240 Pfam Myb-like DNA-binding domain 89 133 IPR001005 -
Amo13g4417 240 Pfam Myb-like DNA-binding domain 14 83 IPR001005 -
Amo13g4417 240 SUPERFAMILY Homeodomain-like 11 130 IPR009057 -
Amo13g4417 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 212 - -
Amo13g4417 240 SMART sant 13 85 IPR001005 -
Amo13g4417 240 SMART sant 88 136 IPR001005 -
Amo13g4417 240 CDD SANT 91 134 IPR001005 -
Amo13g4417 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 83 IPR017930 -
Amo13g4417 240 ProSiteProfiles Myb-like domain profile. 9 83 IPR001005 -
Amo13g4417 240 PANTHER TRANSCRIPTION FACTOR MYB74 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4417 Amo-Chr13 140191630 140193110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4417 1 190 MYB Transcription Factor Family AT4G21440 70.048 2.39e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g4417 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4417 K09422 - mnt:21385969 286.189