Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4412 ATGCAACCCGTAACGGATTCAATCAAATTCACGTTCCACGTTGATGAGCACCAAGTGTACTACACATTCTTCATCGGGAACGAATCGTTGTTCTCGAGACTGTTGGTGAGTTCTTCCGGAGAACTTCAGAGGCTGACTTGGATAGAGAGCACGCAGGCATGGAACAAATTCTGGTACGCACCSAAGGACCAATGCGARTATTACAGAGAGTGTGGGGCGTACGGCGTGTGCGACGCAAARGCATCGCCGGTTTGCCAGTGTGTGAAGGGGTTCAGACCGAAGAACCCGCAGGCATGGAACCTTCGGGATGGGTCGAATGGGTGTGTGAGGAAGACGGAYTTGGAGTGTGAGAGTGACGGGTTCTTGAAGATGGGGAATGTGAAGCTGCCYGAGACGACGTCAGTGTTTGTGAATCGGAGCATGGGGATCATGGAATGCGGAGAAGTGTGCCGTCGGAACTGTTCATGTACTGCTTATGCCAATATAGAGATCACCGGTGGGGGCAGCGGATGTGTCATGTGGATTGGCCCCCTCTTAGATATCAGGCGCTATCCTTCCGGTGGTCAYGATCTCTATGTCAGGTTAGCAGCTTCTGATTTGGCTGACACAGAATCTGGAGATGGTTCTCACAACACAGCTAAGGTTGTTGGCATTATAGTTGGCGGTGCAGCTCTTATACTTTTGGCACTGGCTATCTGTTTCTTGTTATGGAAGAAAAGGAAATTCCCATGCATGTTGGAGAGGGAGACAGTGCACKGAGGTTCTCTGGAAAGGAGTCAGGATTTGTTGATGACTGAAGTYGTCTTTTCAAGCAACAGAGAACAGTCTAGTGAAAGGAAAATTGATGACTTAGAGTTGCCATTGTTTGATTTTAATACCTTAACAATGGCTACAAAGAACTTCTCTGAAGAGAATAAACTTGGACAAGGAGGATTTGGTGTTGTTTACAAAGGCAGGTTGATGGAAGGCCAGGAAATCGCTGTGAAGAGGCTATCAAAAAATTCTGGTCAAGGAGTTGAAGAGTTTAAGAATGAGGTCAAGCTGATTGTCAAACTTCAACACCGGAATCTTGTTCGGCTGCTTGGTTGCAGCATTCAAATGGATGAAAAGATGCTTGTGTATGAGTACTTGGAAAATAGAAGCCTTGATGGGATTTTATTTGACAAGGCAAAAAGCTCCTCATTGGATTGGCCAAGGCGCTTCAGCATTATTTGTGGTATTGCTAGAGGACTTCTTTATTTGCACCATGATTCCAGATTTAAGATTATCCATAGAGATCTCAAGGCAAGCAACATTCTACTTGACAAAGAAATGAATCCAAAAATATCAGATTTTGGYATGGCTAGAATTTTTAGCACAAATCAAACAGAAGCTAATACAATGAGAGTTGTTGGAACATAG 1401 0.4468 MQPVTDSIKFTFHVDEHQVYYTFFIGNESLFSRLLVSSSGELQRLTWIESTQAWNKFWYAPKDQCEYYRECGAYGVCDAKASPVCQCVKGFRPKNPQAWNLRDGSNGCVRKTDLECESDGFLKMGNVKLPETTSVFVNRSMGIMECGEVCRRNCSCTAYANIEITGGGSGCVMWIGPLLDIRRYPSGGHDLYVRLAASDLADTESGDGSHNTAKVVGIIVGGAALILLALAICFLLWKKRKFPCMLERETVHXGSLERSQDLLMTEVVFSSNREQSSERKIDDLELPLFDFNTLTMATKNFSEENKLGQGGFGVVYKGRLMEGQEIAVKRLSKNSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLVYEYLENRSLDGILFDKAKSSSLDWPRRFSIICGIARGLLYLHHDSRFKIIHRDLKASNILLDKEMNPKISDFGMARIFSTNQTEANTMRVVGT* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4412 466 Pfam S-locus glycoprotein domain 7 95 IPR000858 GO:0048544
Amo13g4412 466 PANTHER - 5 466 - -
Amo13g4412 466 Pfam PAN-like domain 116 181 IPR003609 -
Amo13g4412 466 Gene3D Transferase(Phosphotransferase) domain 1 377 466 - -
Amo13g4412 466 Gene3D Phosphorylase Kinase; domain 1 274 376 - -
Amo13g4412 466 CDD PAN_AP_plant 112 196 - -
Amo13g4412 466 SMART serkin_6 301 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4412 466 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 466 - -
Amo13g4412 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Amo13g4412 466 Pfam Protein tyrosine and serine/threonine kinase 304 456 IPR001245 GO:0004672|GO:0006468
Amo13g4412 466 ProSiteProfiles EGF-like domain profile. 61 97 IPR000742 -
Amo13g4412 466 SUPERFAMILY Protein kinase-like (PK-like) 281 466 IPR011009 -
Amo13g4412 466 ProSiteProfiles Protein kinase domain profile. 301 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4412 466 ProSiteProfiles PAN/Apple domain profile. 116 196 IPR003609 -
Amo13g4412 466 SMART ntp_6 116 195 IPR003609 -
Amo13g4412 466 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Amo13g4412 466 Pfam Receptor serine/threonine kinase 257 291 IPR022126 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4412 Amo-Chr13 140122515 140128420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4412 215 466 Receptor kinase-like Gene Family AT4G23190 52.381 3.11e-79 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g4412 PK_Tyr_Ser-Thr 3.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4412 - - gmx:106799702 749.969