Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4411 ATGTGCTCTGCAGAAAATCCTCTCTGCCTTATCATGGGTCAAAATCAAAAACCAAAMTTACATTGCCATTATTGGCTGCTAAGTTCTTTGACAGTAGTCCTTCTTAACATCTCATTTGGCTCTTGCTTTGACACCATATCCACTGACAAAGCCCTCAGAGATGGTGAGATTCTTGTTTCTAGGGACAAGACTTTTGCTATGGGATTCTTCAGCCCAGGCAGGTCCACTTCCCGTTACATCGGAATCTGGTACAACAATCTGCCACAACAAACTGTTATTTGGGTTGCAAACAGAAACACTCCCATCGATGACACATCTGGGGTTCTCTCAATCAACCAACATGGAAATCTAGCACTCCACCATAATCATAGCATTCTTCCAATTTGGTCTACCAATGTTTCAGTCACACCTTCAGACACAAACAAAGTTATAGCTCAACTCACAGACATAGCCAACCTTGTTCTGATCCTTAACGACACCAAAACTGTCATCTGGCAAAGCTTTGATCAACCAACAGATACTTTGATTCCCCACCTGAGATTAGGATTTGACAGAGGAAAAGACCAGAGCTGGGTCATCCAATCTTGGAAAACAGATGATGATCCTTCACCTGGTGACTTCACATTGAAGTTCAGCACCAATGGTATGCCACAGTTGTTTTTATACCACAAGAATCTTCCATGGTGGCGAGGAGGYCCGTGGAATGGTGAGTTTTTCATGGGTATACCCAACATGAAACGAGATAACAACATTTTCAATGTTTCTTGTGAGGAAGATGAGAACCATGCAGCACTCTCATATAACACCTATGACAAATCCGTTCCCAGTTGGGTGGTGGTTCAGCAATCTGGTTTCTTTCAAGTGTTCACTTGGGATAACCAGAAGAATCAGTGGAACCGSTACTGGTCAGAGCCTACTGGTCAATGTGATAACTATGGAACATGTGGACCTAACAGTAACTGTGACCCTTTGAACTATGAGGATTTTCAGTGCACTTGTRTGCCCGGGTTTGAACCGAAATTCCRGCGTAACTGGTATGAGAACAGAGATGGATCAGGAGGGTGTGCGAGGAAGAAAGGTGCATCTGTTTGTGGGAGTGGAGAAGGGTTTGTGAATATTGAAGGATTGAAGGTTCCTGATACATCTGTGGCTATAGTTAAGGAGGGTTTGAGTTTGGAGGAGTGTGAGAAGGAATGCTTGAGAAACTGTTCTTGCAGTGCTTATGCAGTTGCTAATGTGGCCAGTGGTGGAAGTGGATGCTTTGCATGGCATGGTGATTTGATGGACATAGAGAAGCTTAGTGATCAAGGCCAAGAAATATTTGTACGTGTTGATGCTGTTGAATTAGCTAATTATTACAAGAAAACAAAAGAAGCATTTGGTAAGAAAAAGATTATAGGGGTTCTGGTAGCTTCTTTGTTTGCAGTTCTCCTTATTCTGGCCTGTGTATATCACTTGCGGTTGCAGAAGAAAAAGAAAGAAGATAAAATGTTGCGGCAATTGAATCAAGATTCTCCTAGAGAAAACAGTGATGATATTCAAAGTAAAGGAGATCCAAATCTCCCCTTCTTCAGCATTAAAATAATCATGGCAGCCACAAAAAATTTTGCTCCTCAGAATAAACTTGGACAAGGTGGATTTGGCTCTGTCTATAAGGGTCAGCTATACAATGGACAAGAGATAGCAGTGAAAAGATTGTCCAGAGATTCTGGACAAGGYATAGAAGAATTTAAAAATGAAGTTACACTATTAGTTAAACTTCAACATAGAAATCTTGTGAGATTGCATGGTTGTTGCCTTGAAAAGGAAGAAAGAATGCTTGTCTATGAATACCTTCCAAACAGAAGTTTGGACTTCTTTATATTCGATAAACTCCAAAGGTCATTGTTAGACTGGGATCGGCGTTTTGAAATTATTTATGGGATTGCTCGAGGTGTYTTATATCTTCATCAAGATTCAAGARTAAAAATAATTCACAGAGATCTCAAAGCTAGCAATGTTCTCCTTGATGCCACAATGAATCCGAAAATCTCAGACTTTGGCATGGCTAGAATATTTGGCGAAGATCAAATCCAAGCCAGAACGAGAAGAGTAGTAGGAACYTATGGTTATATGTCACCCGAATATGCAATGGAAGGACGATATTCAACAAAATCTGATGTCTTTAGTTTTGGAGTCTTACTTCTAGAGATTATTGCCGGCAAGAGGAACACAGATAGCAGCGACAAAGAAAGAGCCTCCCCAAATTTAATTGGATATGTATGGAAATTGTGGACAGAAGGAAAGGCTTTGGATATGGTAGACACAACACTAGACCAATCTTATCCTCCTGAGATAGCTTTGAAGTGCATTCAAATTGGACTATTGTGTGTGCAAGAAAATGTGAACAAGAGACCTTCCATGWTGGAGGTTGTTTTCATGTTAGGGAATGAAGCACCTATTTGTCCACCTCAAAAGCCAGCATTTTTATTCAATGGCAACCAAGATGACTTGCAAGAGTCATCAACATCTGGAGGAGGATCTTCAATTAATGAAGTAACAGCAACTACCATCTCTGCTAGATAA 2565 0.4051 MCSAENPLCLIMGQNQKPXLHCHYWLLSSLTVVLLNISFGSCFDTISTDKALRDGEILVSRDKTFAMGFFSPGRSTSRYIGIWYNNLPQQTVIWVANRNTPIDDTSGVLSINQHGNLALHHNHSILPIWSTNVSVTPSDTNKVIAQLTDIANLVLILNDTKTVIWQSFDQPTDTLIPHLRLGFDRGKDQSWVIQSWKTDDDPSPGDFTLKFSTNGMPQLFLYHKNLPWWRGGPWNGEFFMGIPNMKRDNNIFNVSCEEDENHAALSYNTYDKSVPSWVVVQQSGFFQVFTWDNQKNQWNRYWSEPTGQCDNYGTCGPNSNCDPLNYEDFQCTCXPGFEPKFXRNWYENRDGSGGCARKKGASVCGSGEGFVNIEGLKVPDTSVAIVKEGLSLEECEKECLRNCSCSAYAVANVASGGSGCFAWHGDLMDIEKLSDQGQEIFVRVDAVELANYYKKTKEAFGKKKIIGVLVASLFAVLLILACVYHLRLQKKKKEDKMLRQLNQDSPRENSDDIQSKGDPNLPFFSIKIIMAATKNFAPQNKLGQGGFGSVYKGQLYNGQEIAVKRLSRDSGQGIEEFKNEVTLLVKLQHRNLVRLHGCCLEKEERMLVYEYLPNRSLDFFIFDKLQRSLLDWDRRFEIIYGIARGVLYLHQDSRXKIIHRDLKASNVLLDATMNPKISDFGMARIFGEDQIQARTRRVVGTYGYMSPEYAMEGRYSTKSDVFSFGVLLLEIIAGKRNTDSSDKERASPNLIGYVWKLWTEGKALDMVDTTLDQSYPPEIALKCIQIGLLCVQENVNKRPSMXEVVFMLGNEAPICPPQKPAFLFNGNQDDLQESSTSGGGSSINEVTATTISAR* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4411 854 ProSiteProfiles EGF-like domain profile. 305 343 IPR000742 -
Amo13g4411 854 SUPERFAMILY Protein kinase-like (PK-like) 519 824 IPR011009 -
Amo13g4411 854 MobiDBLite consensus disorder prediction 497 518 - -
Amo13g4411 854 Gene3D Hepatocyte Growth Factor 362 443 - -
Amo13g4411 854 Pfam Protein tyrosine and serine/threonine kinase 539 806 IPR001245 GO:0004672|GO:0006468
Amo13g4411 854 Pfam S-locus glycoprotein domain 229 341 IPR000858 GO:0048544
Amo13g4411 854 MobiDBLite consensus disorder prediction 825 854 - -
Amo13g4411 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Amo13g4411 854 MobiDBLite consensus disorder prediction 824 854 - -
Amo13g4411 854 Pfam PAN-like domain 364 430 IPR003609 -
Amo13g4411 854 CDD STKc_IRAK 542 808 - -
Amo13g4411 854 PIRSF SRK 15 854 IPR024171 GO:0004674
Amo13g4411 854 ProSitePatterns Protein kinases ATP-binding region signature. 542 564 IPR017441 GO:0005524
Amo13g4411 854 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 27 851 - -
Amo13g4411 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 202 IPR036426 -
Amo13g4411 854 CDD PAN_AP_plant 364 444 - -
Amo13g4411 854 Gene3D Transferase(Phosphotransferase) domain 1 612 813 - -
Amo13g4411 854 PANTHER - 27 851 - -
Amo13g4411 854 ProSiteProfiles Protein kinase domain profile. 536 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4411 854 Pfam D-mannose binding lectin 91 197 IPR001480 -
Amo13g4411 854 SMART ntp_6 365 444 IPR003609 -
Amo13g4411 854 PRINTS Thrombomodulin signature 461 485 - -
Amo13g4411 854 PRINTS Thrombomodulin signature 317 339 - -
Amo13g4411 854 ProSiteProfiles Bulb-type lectin domain profile. 43 168 IPR001480 -
Amo13g4411 854 Gene3D Phosphorylase Kinase; domain 1 510 611 - -
Amo13g4411 854 MobiDBLite consensus disorder prediction 497 514 - -
Amo13g4411 854 ProSiteProfiles PAN/Apple domain profile. 364 445 IPR003609 -
Amo13g4411 854 Gene3D - 40 168 IPR036426 -
Amo13g4411 854 CDD B_lectin 52 171 IPR001480 -
Amo13g4411 854 SMART blect_4 49 171 IPR001480 -
Amo13g4411 854 SMART serkin_6 536 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4411 Amo-Chr13 140117273 140120806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4411 475 854 Receptor kinase-like Gene Family AT3G45860 50.646 9.72e-124 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g4411 PK_Tyr_Ser-Thr 7.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4411 - - aprc:113859914 1234.55