Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4410 ATGGCCCAAAACCATTATTCTCTGCTTAGTTCTTTGAGTGTAGTCCTTCTCAGCATCTCACTTACCTCATGTTCTGATACAATTACCATTGACAAAGCCCTCAGAGATGGTGAGATTCTTGTTTCTAAGAGCAAAACCTTTGCCATGGGATTCTTTAGTCCAGGCAAATCCACTTCCCGTTACATCGGAATCTGGTACAACAACTTGCCAGAACAAACTGTGATTTGGGTTGCAAACAGAAACACTCCCATCAACGACACATCAGGGGTTCTCTCAATGAACCACCATGGAAATCTAGCACTCTATAACAACTATACCACTCTTCCAATTTGGTCTTCAAATGTTTCACTCACACACTCCAACAACAACGTTGTAGCTCAACTCTTGGACACAGCAAACTTTGTTCTGTTCCAAAACAACACCGGAACCATCATATGGCAAAGCTTTGATCACCCTACTGACACCTTCATTCAGCACTTGAAAGTTGGTTTTGACAGAAGAAGTAACAAGAGCTGGTTCCTCCAATCATGGAAGACAGATGATGACCCTGCTCCTGGTGCATACACGTTGGGATTCAACCCCAATGGGAAGCCACAGCTGTTCTTATACAACAAGAACCTTCCATGGTGGCGAGGAGGATCATGGAACGGTGAATTGCTCATGGGTATACCAAACATGAAACGAGACATGCTCAAATTCAATATTTCTTATGAGGAAGATGAAAACCATTCAGCACTCTCATACACCATGTTTGATGAGTCCATTGTGAGCAGAATAGTGGTTCAGCAATCAGGTTTCTTTCAAGTGTTCACCTGGGATTTCCAGAAGAGTCAGTGGAACCGGTACTGGTCAGAGCCAACAGGTCTATGTGATAACTATGGAACATGTGGATCTAACAGTAACTGTGACCCTTTGGACTATGATGAGGCCTTTCAGTGTAGTTGTTTACCTGGGTTTGAACCCAAGTTCCCGCGAAACTGGTATGAGAACAGAGATGGATCAGGAGGGTGTGTGAGGAAGAAAGGGGTGTCTGTTTGTGAGAATGGGGAAGGGTTTGAGAAGATTGAAAGCTTGAAGATTCCTGATACATCTATGGTAATAGTTAAAAAGGGTTTGAGTTTGAATGAGTGTGAGAAAGAGTGTTTGAGAAACTGCACTTGCAATGCATATTCAGTTGCTGATATTAGGAATGGTGGGAGTGGGTGCATGACATGGCATGGGGACTTGATGGACATTCAGAAGCTCAGTGATCAAGGCCAAGATCTTTTTGTCCGTGTCGACTCTTTTGAGCTAGCCAAGTACTATAAAAGACCAAGATTGTTTGGTAAAGACAAGTTGGTAGCGGCTCTGGTAGCTTTCATGCTTCTGGTTCTCCTTCTAGTGTCCAGTGTGTATTACTTGTGGAAGAAGAGTAAAAACAAAGAGAAAATGATGTGGGATTTAAATCATGGTTCTCCAAGAGAAGAAAACGATGTTCAAAGCAAAAGACATCCAAACCTTCCCTTATTCAGTTTTAAAATGATAATGGCAGCCACAGAAAAATTTTCTCCAGATAATAAGCTAGGCCAAGGTGGATTTGGCTCTGTCTTTAAGGGTCATCTATTTGATGGACAGGAGATAGCAGTAAAAAGACTCTCCAAAGATTCAGGTCAAGGAATAGAAGAGTTCATAAATGAAGTTACACTGCTAGTTAAACTCCAACACAGAAATCTTGTGAGGTTGCTCGGTTGTTGCCTTGAGAAGGAAGAAAGAATGCTAGTTTACGAATACCTTCCAAACAAAAGCCTAGACTTCCTCATATTTGATGAAGTTCGAAGATCATCGTTAGATTGGGGTCAACGCTTTAAAATTATTTCGGGAATTGCTCGAGGTGTATTGTATCTTCATCAAGATTCAAGATTGAAAATAATTCACAGAGATCTAAAAGCCAGCAATGTTCTTCTTGATGCTGTAATGAATCCCAAAATCTCAGACTTTGGAATGGCTAGAATATTTGGAGAAGAACAAATTCATGCAAGTACAAAAAAAGTAGTTGGAACCTATGGTTATATGTCACCTGAATATGCAATGGAAGGACGATACTCTACAAAATCAGATGTCTTCAGTTTCGGAGTCTTGTTATTGGAGATTATTGCTGGAAAAAGAAATTCAAATTGTGAAAAAGGAAGAGCAGCCTCCTTAATTGGATATGTGTGGAAACTTTGGACTGAAGGAAGGGCCTTGGATGTTGTAGATTCAACACTAGGCCAATCTTATCCTCCTGAAATAGCACTGAGGTGCATTCAAATTGGACTATTGTGTGTGCAAGAAAGCGTCAACAATAGACCTTCCATGTTAGAAGTTGTTTTCATGCTACGCAATGAAGCACCTATTTGTTCACCTCAGAAGCCAGCATTTTTATTCAATGGCAATCTGGACATGAAAGATTCATCAACATCTGGAGGAGGATCTTCAGTAAATGAAGTGACAGTAACTACCATCTCTGCTAGATAA 2493 0.4087 MAQNHYSLLSSLSVVLLSISLTSCSDTITIDKALRDGEILVSKSKTFAMGFFSPGKSTSRYIGIWYNNLPEQTVIWVANRNTPINDTSGVLSMNHHGNLALYNNYTTLPIWSSNVSLTHSNNNVVAQLLDTANFVLFQNNTGTIIWQSFDHPTDTFIQHLKVGFDRRSNKSWFLQSWKTDDDPAPGAYTLGFNPNGKPQLFLYNKNLPWWRGGSWNGELLMGIPNMKRDMLKFNISYEEDENHSALSYTMFDESIVSRIVVQQSGFFQVFTWDFQKSQWNRYWSEPTGLCDNYGTCGSNSNCDPLDYDEAFQCSCLPGFEPKFPRNWYENRDGSGGCVRKKGVSVCENGEGFEKIESLKIPDTSMVIVKKGLSLNECEKECLRNCTCNAYSVADIRNGGSGCMTWHGDLMDIQKLSDQGQDLFVRVDSFELAKYYKRPRLFGKDKLVAALVAFMLLVLLLVSSVYYLWKKSKNKEKMMWDLNHGSPREENDVQSKRHPNLPLFSFKMIMAATEKFSPDNKLGQGGFGSVFKGHLFDGQEIAVKRLSKDSGQGIEEFINEVTLLVKLQHRNLVRLLGCCLEKEERMLVYEYLPNKSLDFLIFDEVRRSSLDWGQRFKIISGIARGVLYLHQDSRLKIIHRDLKASNVLLDAVMNPKISDFGMARIFGEEQIHASTKKVVGTYGYMSPEYAMEGRYSTKSDVFSFGVLLLEIIAGKRNSNCEKGRAASLIGYVWKLWTEGRALDVVDSTLGQSYPPEIALRCIQIGLLCVQESVNNRPSMLEVVFMLRNEAPICSPQKPAFLFNGNLDMKDSSTSGGGSSVNEVTVTTISAR* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4410 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Amo13g4410 830 PIRSF SRK 1 830 IPR024171 GO:0004674
Amo13g4410 830 Gene3D Hepatocyte Growth Factor 344 429 - -
Amo13g4410 830 SMART ntp_6 347 426 IPR003609 -
Amo13g4410 830 CDD STKc_IRAK 521 785 - -
Amo13g4410 830 ProSiteProfiles PAN/Apple domain profile. 346 427 IPR003609 -
Amo13g4410 830 Pfam PAN-like domain 346 412 IPR003609 -
Amo13g4410 830 Gene3D - 20 150 IPR036426 -
Amo13g4410 830 SMART serkin_6 515 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4410 830 Pfam D-mannose binding lectin 73 178 IPR001480 -
Amo13g4410 830 ProSiteProfiles Bulb-type lectin domain profile. 25 149 IPR001480 -
Amo13g4410 830 CDD PAN_AP_plant 347 426 - -
Amo13g4410 830 ProSiteProfiles Protein kinase domain profile. 515 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4410 830 SMART blect_4 31 152 IPR001480 -
Amo13g4410 830 Pfam S-locus glycoprotein domain 210 323 IPR000858 GO:0048544
Amo13g4410 830 Gene3D Phosphorylase Kinase; domain 1 489 590 - -
Amo13g4410 830 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
Amo13g4410 830 Gene3D Transferase(Phosphotransferase) domain 1 591 793 - -
Amo13g4410 830 PANTHER - 11 827 - -
Amo13g4410 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Amo13g4410 830 SUPERFAMILY Protein kinase-like (PK-like) 498 799 IPR011009 -
Amo13g4410 830 ProSiteProfiles EGF-like domain profile. 286 325 IPR000742 -
Amo13g4410 830 CDD B_lectin 34 152 IPR001480 -
Amo13g4410 830 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 11 827 - -
Amo13g4410 830 Pfam Protein tyrosine and serine/threonine kinase 518 782 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4410 Amo-Chr13 140112245 140116227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4410 503 830 Receptor kinase-like Gene Family AT4G11530 54.599 1.93e-121 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g4410 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4410 - - aprc:113859914 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4410 13 140112245 140116227 Amo20g0781 20 11290783 11293967 PCT
Amo13g4410 13 140112245 140116227 Amo10g0079 10 864138 869173 PCT