Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4409 ATGGGTTTTCTTGGTATAAGTTTCCAAAGCCGACAGACACTAAACTCCAACATCATAATAATGAATCCCTTCTTTCTACTGTCATTACTCCTTTACCTTCCTTGTTGCAACTCACTTCACACCATAACACAAAACCAACCTCTCAAAGACGGCGACGTTCTTGTCTCCCAAGGCAGAGCAACCTTTGCACTCGGTTTCTTCAGCCCTCAAAATTCTCAAACCCGCTATCTTGGGATATGGTTCAACAACATCTCACAACAAACCGTTGTTTGGGTTGCCAACAGAGACACCCCTCTTAACACCACTTCAGGTCTTCTCTCCATCAACAACCATGGAAACCTCGTACTCCACGACCGTAACCCTCTTTGGTCCTCAAACCTTTCTCTCCCATCTATATCTACCAACGCTTCAGCTAAGCTCTTAGACACGGGAAATTTGGTTTTGACCATCAACAACAACAACAGCGACCAAGTCTTGTGGCAGAGTTTTGATTACCCTGGCAACACTTACCTTCCCTACATGAAGCTTGGGTTCGACCGTAAAACTGGCTTGAACCGGTTTCTAACGTCATGGAAATCCCGGAACGACCCGGGAACCGGTAACGCGACATACAGGATGGACCGGACCGGGTTGCTGCCGCAACTATTTCTATACACGAACAATGCTCCCTTGATGCGGGTTGGGCCGTGGACGGGTCTAAGATTGAGCGGGGCAGCGGAGATGACTCAAGACTTCATCTTCAGCTTCTTCTTCATCGACGATTCAAACGAGGTTTCATCAATCTACAGAGTGAACGACCCAAACCTGCTTTCGATCTCTGTGCTGGAGGAAACCGGGTACCTAAGGAGATTAGTATGGCAAGCTCACGAGGGGAAGTGGTTCGAGCTCTGGAACGGTCCACGGGAAGAGTGTGACCACTACAGAAGGTGCGGGTCGAATTCCATTTGTAACCCTTATCATGAAGAGACGTTCTTGTGCGAGTGCTTGCCAGGATTCGAACCCAAGTCGGAGAGAGAGTGGTATCTGAAAGACGGGTCAAGTGGGTGCGTGAGGAAGGCCAACGTGTCCACGTGTCGAAGCGGGGAGGGGTTTGTGGAGTTGGCGCTTGTGAAGGCGCCGGATACATCCAAGGCCAGCGTGGATTTGGGGCTGAGTATGGAGGAGTGTAGGGATACGTGCCTTAGGGATTGTTCTTGTGCTGCCTATACTAGTGCTAATCAGAGCTCAAATACCGGTTGTATTACCTGGCATGGAGATATGGAAGATACTAGAAAGTTCTCCCAAGTCGGACAAACTTTGTTTCTACGTGTCGATGCACTAGAATTGGCTAAATATTCCAAGCACTACAATGACCATGCTTCTCTTGGCAAGAAAAAGATGGCGCTTATTTTAGCGCTTTCTATTTCCTTCTTCATGTTTTTGGTCGTCACAATCCTCGTGTACTTTTTCAAGGTTAGGAAGCAAGTTGGTAGAAGAAGGAATCACAAGCATTCTTCCTTTCGTATTCACGTTGAGGAGAATCTACAAAATTTTGACAACACAAAAGATTCAGATTTGCCACTACTATTTGATTTAATCTCTATCACTTCTGCAACTCACAATTTTTCTCCTACTAACAAGCTTGGTCAAGGTGGATTTGGTTCTGTATATAAGGGTTGCTTAATTGATGGAAGAGAAATAGCAGTAAAACGATTATCCAAAAATTCAGGTCAAGGAACCGAAGAATTTAAAAATGAAGTTACCTTATTAGTGAAACTTCAACACAGAAATCTTGTAAGACTATTGGGTTGTTGCTTTGAGAAAGAAGAAAGAATGTTGATTTATGAATATCTTCCGAACAAAAGTTTGGACTTCTTTATATTTGATGAAACTCAAAGATCATTACTAAATTGGGGTCAACGTTTTGAAATTATTTTTGGGATTGCTCGAGGAATATTATATCTTCATCAAGATTCGAGACTAAAAATAATTCATAGAGATCTAAAGGCTAGCAATGTTTTACTGGATGCTGCAATGAATCCCAAAATTTCAGATTTTGGAATGGCTAAAATATTTGGTGAAGATCAAATTCAAGCAAGAACAAGAAGAGTTGTTGGAACATATGGATACATGTCACCAGAATATGCAATGGAAGGACAATATTCGACAAAATCAGATGTTTTTAGTTTTGGAGTTTTACTTTTAGAAATTGTTGCCGGCAAGAGGAACACAGACCATGATCAAGGACGATCCTCCCGAAATTTAATTGGATACGTGTGGATACTTTGGACAGAAGGAAAGGCCTTGGATCTAGTAGATTCATCACTTGGGCAGTCTTATCCTTCTGCTACAGTTTTGAGGTGCATTCAAGTTGGACTATTGTGCGTGCAAGAAAATGTGAACAATAGACCTTCCATGTTAGAAGTTATTGTCATGCTAGGAAATGAAGCACCCATTCGCCAACCCCAAAAACCAGCATTTTTATTCAGCAACAACCGAGAGCTAGTGCAAGAACCATCATCAATAGTGGAAGATGGATCTTCATCAGTAAACGAAATAACAACAAGTACAATCTTTGGCCGTTAA 2565 0.4281 MGFLGISFQSRQTLNSNIIIMNPFFLLSLLLYLPCCNSLHTITQNQPLKDGDVLVSQGRATFALGFFSPQNSQTRYLGIWFNNISQQTVVWVANRDTPLNTTSGLLSINNHGNLVLHDRNPLWSSNLSLPSISTNASAKLLDTGNLVLTINNNNSDQVLWQSFDYPGNTYLPYMKLGFDRKTGLNRFLTSWKSRNDPGTGNATYRMDRTGLLPQLFLYTNNAPLMRVGPWTGLRLSGAAEMTQDFIFSFFFIDDSNEVSSIYRVNDPNLLSISVLEETGYLRRLVWQAHEGKWFELWNGPREECDHYRRCGSNSICNPYHEETFLCECLPGFEPKSEREWYLKDGSSGCVRKANVSTCRSGEGFVELALVKAPDTSKASVDLGLSMEECRDTCLRDCSCAAYTSANQSSNTGCITWHGDMEDTRKFSQVGQTLFLRVDALELAKYSKHYNDHASLGKKKMALILALSISFFMFLVVTILVYFFKVRKQVGRRRNHKHSSFRIHVEENLQNFDNTKDSDLPLLFDLISITSATHNFSPTNKLGQGGFGSVYKGCLIDGREIAVKRLSKNSGQGTEEFKNEVTLLVKLQHRNLVRLLGCCFEKEERMLIYEYLPNKSLDFFIFDETQRSLLNWGQRFEIIFGIARGILYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMAKIFGEDQIQARTRRVVGTYGYMSPEYAMEGQYSTKSDVFSFGVLLLEIVAGKRNTDHDQGRSSRNLIGYVWILWTEGKALDLVDSSLGQSYPSATVLRCIQVGLLCVQENVNNRPSMLEVIVMLGNEAPIRQPQKPAFLFSNNRELVQEPSSIVEDGSSSVNEITTSTIFGR* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4409 854 PIRSF SRK 12 854 IPR024171 GO:0004674
Amo13g4409 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Amo13g4409 854 Pfam Protein tyrosine and serine/threonine kinase 538 804 IPR001245 GO:0004672|GO:0006468
Amo13g4409 854 CDD PAN_AP_plant 356 437 - -
Amo13g4409 854 SMART blect_4 45 166 IPR001480 -
Amo13g4409 854 Pfam S-locus glycoprotein domain 226 336 IPR000858 GO:0048544
Amo13g4409 854 Gene3D Phosphorylase Kinase; domain 1 510 610 - -
Amo13g4409 854 Gene3D - 36 163 IPR036426 -
Amo13g4409 854 CDD B_lectin 45 166 IPR001480 -
Amo13g4409 854 Pfam PAN-like domain 358 422 IPR003609 -
Amo13g4409 854 Gene3D Transferase(Phosphotransferase) domain 1 611 817 - -
Amo13g4409 854 CDD STKc_IRAK 541 806 - -
Amo13g4409 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 89 197 IPR036426 -
Amo13g4409 854 ProSiteProfiles EGF-like domain profile. 300 337 IPR000742 -
Amo13g4409 854 ProSiteProfiles PAN/Apple domain profile. 358 439 IPR003609 -
Amo13g4409 854 ProSiteProfiles Bulb-type lectin domain profile. 39 161 IPR001480 -
Amo13g4409 854 ProSitePatterns Protein kinases ATP-binding region signature. 541 563 IPR017441 GO:0005524
Amo13g4409 854 PANTHER - 26 851 - -
Amo13g4409 854 ProSiteProfiles Protein kinase domain profile. 535 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4409 854 SMART ntp_6 359 437 IPR003609 -
Amo13g4409 854 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 26 851 - -
Amo13g4409 854 SUPERFAMILY Protein kinase-like (PK-like) 519 824 IPR011009 -
Amo13g4409 854 Pfam D-mannose binding lectin 88 192 IPR001480 -
Amo13g4409 854 SMART serkin_6 535 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4409 Amo-Chr13 140101794 140106023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4409 521 827 Receptor kinase-like Gene Family AT3G45860 60.000 4.36e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g4409 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4409 - - ahf:112791364 1682.54