Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4383 ATGGGAAAAAAATCAGCTGCGGCCACCGGGGAGGAGGAGGATGTTCCGCCGGACAACCTGAGGTGCGGGAGGACGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGAAGGATAATCTGAAGCTGTGCGAGGTTCACTACCTTCAAGGTCGCCATCGCCAGTACAAGGAGAAGGTCCCTGAGTRCCTCAAGCTTCAGAGGAATAAGCGTAAGAGCCACTCTCKTRCTRCTTCTCCTCCTTCRTCTCCTGCCAACAATGTCGAAATTAGGGCACGCAAGGARTCCAAGATTGCTCTTCTCGCCAAAAAGAAGCGCAAGCTTTCCGATGGTACTTCAGAGGCATTGGTCGTTCAGAAGAAGAATAAGAACAAGAAAAGGAAAAACAAAAACAAGGGGTTGCGGAGTGGTGATGATAAGCATTTGGAGCTTATAAGGATGGTCTTGACGAGAGAGGTTGAGAAAAGGAAGAAGAGGAACAAGAAGAATGACGATGATGAAGAAGATGAAGAGTGCAGCGAAGGAGSAGAGTTGCGGAGAGAATTGCCGAATGGAGTGATGGCTATCTCTACAGCTTCAACCGCCAATGGTTTCAATGGCAATGTGGGTTCCCATTTTGATGTAAAAGTGGCTGCTGATTCTAATTCCAAAGCGTTCGCCGTCACGCCGCGTTACTTCAGGTCCAAGAATGTTGATAGAGTCCCTGTTGGCAGGTTGCAGGTTGTGCAGTATGGACAGGGCTTGAAGAAGAAGGGAAAGGGTAAGAAGAAGAGGTGTCATTGGTGCCAGAAGAGTAATTCTCAGAATCTTATCAAGTGTTCTAGCTGTAACAAGGAGTTCTTCTGCATGGATTGCATAAAACAGCGGTATTTTGGCACTGAGAATGAAGTTAAGAAGGCATGCCCTGTTTGTAGAGGAACTTGCACTTGTAAGGACTGTRTGGCAAGTCAATATAAAGACAGTGAAAGTAAGGAACATTCGGCTGATAAAAGCAGAGTTGGTAGAATATTGCATTTACATTACCTACTCTGTATGCTCCTTCCAGTACTGAAACAAATAAGTGAATATCAGGATACTCAGCTAGAAACTGAAGCAAGAATTAAAGGGATAGAAGCTTCTGATATTCACATCAGGCAGGTTGAATTTGGCTTCAATGAGAAAAATTTCTGCAATCACTGCAAAACTCCCATTTTGGATCTCAATAGAAGCTGCCCTAGTTGCTTATATAGCCTTTGCTTAAATTGTTTTCAAGAATTAAGTCAGGGAAGCATTTCTGGAGAATCAATGTTGAAGCTACCGATTAAAACAAAAACTTGCGCTGCCCGTGAGAAAGAAAATGCGGATGAGAAGGCCATTTCTAGTTGCAATATAACTCATTGTAATGGCACTGACAATGTATCATTTCCATCTACAGAACTTGGTGGTTGTGGTCATAGCCACCGTGATTTGAGATATATTTTTCCCTCTAGTTTGATCAAAGAGATGGAACTAAAGGCAGAAGAAATCATTTGCAGTTATGAATTGCCAGAAACACCAGACAAAAGTTCAAAATGCTCAATGTGTTCTGACACAGATCACAAAACTAAAAGACATAAGCAGTTGCAAGAAGCAGCTTTAAGAGGGGATTCAAATGATAATTGCTTGTTTAACCCCACAGTTTCGGACATCAATGGTGATAATTTTGAACACTTTCAAAAACACTGGGGAAAAGGCCATCCCGTAGTGGTGCAAGATGTTCTTCGAAAGACATCAAACCTCAGCTGGGATCCACTGATCATGTTCTGTAGTTATCTTGAGCGGAGCATTACAAGATACGAGAGTGATAAGGACTTACTTGAATCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTCTTTTAGCGGGTCTCTCAAATGTCGTCCTTGCGAAAACACTTGCCATGAGATGCTGAAATTAAAGGGGTTGTTGTCTTCCCAACTTTTCAAAGAGCAATTTCCAGGTCATTTTTCTGAAGTAATTGATGCTCTACCAATTCAAGAATACATGAATCCRATGTCTGGTCTTCTGAATTTGGCAGCAAGTTTGCCACTTCAGAGTACTAAACACGACATTGGACCATACGTGCATATTTCATWTGGCTGTGCCGACAAGGAAGCTGATTCTGTGACTAAACTCTGCTATGATTCATATGATGTGGTTAATATTATGGCACATACCACGGATGTTCCCCTATCTACAGAGCAGCTTTCAAAAATTCGACGACTACTGAAAAAGCATAAAGCTTTGTGTCGAAGGGATTCTTCTAAAATTACTGCTGAACAACAACAGGAAGAGAAAGTAAAAGAAACGTTACCACCACATGTTGAAGAAGTGGAACAAAAAGGTTCACAGCGAGTGGCCAAAGAAGTTGACTTTTTAAGGAGAGTCAATAGAACATCCTTTGTCTCAACTCACACTGAAAAAGCAACTACTGGAAGTATAGAGAACAGCTTTTCCCAGGATAGAGAATGTGATTTATCTGATTCCGATTCGGAACCCACAGTTCTCCATGGGTTGTCTACAGGCCGTAATCCAAGAAATCTGTTTGAAAGCTCGAAAGATAAAAATAAGTTATCTGCTGAGCATTCTGGGGCCCAATGGGATGTATTCCGCAGACAAGACGTTCCAAAGCTCATGGAATACCTTATAAGACATTGTGATGAATTTACTCATAACTATGACAATGACAAAGTGATGGTTCATCCAATTCTAGATCAGAGCATTTTTCTTGACAAAAATCACAAAATAAGGCTTAAAGAGGAGTTTCAGGTTGAACCATGGACATTCAAGCAACATGTTGGAGAAGCCGTTGTCATTCCCGCTGGATGTCCATACCAGATCAGAAATCCTAAGTGTTGCGTTCATGTGGTGTTGGAATTTGTGTCACCGGAAAATGTCTCCGAGTGTATCCAGCTGATTGATGAGGTCCGACTGCTGCCGGCAGACCATAAAGCCAAAGTAGAAACTTTGCAGGTAAAGAAAATGGTGCTTCATAGCATGAATACAGCAATTAAGGAAATGCATGAGCTTACAAACAAGCCAGCCAAAACATGA 3078 0.422 MGKKSAAATGEEEDVPPDNLRCGRTDGRQWRCRRRVKDNLKLCEVHYLQGRHRQYKEKVPEXLKLQRNKRKSHSXXXSPPSSPANNVEIRARKESKIALLAKKKRKLSDGTSEALVVQKKNKNKKRKNKNKGLRSGDDKHLELIRMVLTREVEKRKKRNKKNDDDEEDEECSEGXELRRELPNGVMAISTASTANGFNGNVGSHFDVKVAADSNSKAFAVTPRYFRSKNVDRVPVGRLQVVQYGQGLKKKGKGKKKRCHWCQKSNSQNLIKCSSCNKEFFCMDCIKQRYFGTENEVKKACPVCRGTCTCKDCXASQYKDSESKEHSADKSRVGRILHLHYLLCMLLPVLKQISEYQDTQLETEARIKGIEASDIHIRQVEFGFNEKNFCNHCKTPILDLNRSCPSCLYSLCLNCFQELSQGSISGESMLKLPIKTKTCAAREKENADEKAISSCNITHCNGTDNVSFPSTELGGCGHSHRDLRYIFPSSLIKEMELKAEEIICSYELPETPDKSSKCSMCSDTDHKTKRHKQLQEAALRGDSNDNCLFNPTVSDINGDNFEHFQKHWGKGHPVVVQDVLRKTSNLSWDPLIMFCSYLERSITRYESDKDLLESCLDWCEVEINIRQSFSGSLKCRPCENTCHEMLKLKGLLSSQLFKEQFPGHFSEVIDALPIQEYMNPMSGLLNLAASLPLQSTKHDIGPYVHISXGCADKEADSVTKLCYDSYDVVNIMAHTTDVPLSTEQLSKIRRLLKKHKALCRRDSSKITAEQQQEEKVKETLPPHVEEVEQKGSQRVAKEVDFLRRVNRTSFVSTHTEKATTGSIENSFSQDRECDLSDSDSEPTVLHGLSTGRNPRNLFESSKDKNKLSAEHSGAQWDVFRRQDVPKLMEYLIRHCDEFTHNYDNDKVMVHPILDQSIFLDKNHKIRLKEEFQVEPWTFKQHVGEAVVIPAGCPYQIRNPKCCVHVVLEFVSPENVSECIQLIDEVRLLPADHKAKVETLQVKKMVLHSMNTAIKEMHELTNKPAKT* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4383 1025 MobiDBLite consensus disorder prediction 841 855 - -
Amo13g4383 1025 ProSiteProfiles JmjC domain profile. 679 985 IPR003347 -
Amo13g4383 1025 SMART cupin_9 660 985 IPR003347 -
Amo13g4383 1025 Pfam WRC 17 58 IPR014977 -
Amo13g4383 1025 MobiDBLite consensus disorder prediction 820 863 - -
Amo13g4383 1025 PANTHER PROTEIN B160 12 1020 - -
Amo13g4383 1025 MobiDBLite consensus disorder prediction 110 140 - -
Amo13g4383 1025 ProSiteProfiles Zinc finger RING-type profile. 258 304 IPR001841 -
Amo13g4383 1025 MobiDBLite consensus disorder prediction 155 176 - -
Amo13g4383 1025 Pfam JmjC domain, hydroxylase 871 966 IPR003347 -
Amo13g4383 1025 Gene3D Cupin 551 994 - -
Amo13g4383 1025 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 12 1020 IPR045109 GO:0032454|GO:0033169
Amo13g4383 1025 MobiDBLite consensus disorder prediction 58 89 - -
Amo13g4383 1025 MobiDBLite consensus disorder prediction 1 26 - -
Amo13g4383 1025 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Amo13g4383 1025 SUPERFAMILY Clavaminate synthase-like 559 1007 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4383 Amo-Chr13 139794970 139799931 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo13g4383 JmjC 1.5e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4383 K15601 - gmx:100787798 1262.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4383 13 139794970 139799931 Amo10g0195 10 2023073 2029123 PCT
Amo10g0195 10 2023073 2029123 Amo13g4383 13 139794970 139799931 PCT