Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4381 ATGGGAAGAACACCTTGCTGTGAGAAGAATGGGCTGAAGAAAGGGCCATGGACGCCAGAGGAGGATCAGAAGCTCGTTGATTACATTCACAAACATGGCTACGGCAATTGGAGAACACTCCCTAAGAATGCCGGGTTGCAAAGATGCGGAAAGAGTTGCCGTCTGCGGTGGACAAACTATCTCCGGCCAGATATAAAGCGAGGTCGATTCTCCTTGGAAGAGGAGGAGACCATAATACACCTTCACAGCATTCTTGGAAACAAGTGGTCTGCAATAGCGTCGCGGCTGCCGGGGAGGACAGACAACGAAATAAAGAATTATTGGAATACACACATTAGGAAGAGGCTACTGAGGATGGGAATCGATCCTGTGACACACAGTCCACGCCTAGACCTTCTTGATCTCTCATCTCTCTTTGGTTCATCAATATCACACATCAACAATAACATGCAACACCATCTTAACCCTGAGCTTCTCAAATTGGCCACGTCACTCTTCTCTCCTAATAATAATAATAATAATTCTCTTGACAACAGCCACAACCAAATCATCAGTAGTGATGTTTCCTTGTCTTTCCCTCAAGCAAACTTTCTAGAATCCAATAATAATGTCGACTCAGCCTACCCATCAAATCTACTGCACCATGACCTAATGAATACTAGTGATTATTGGGACGCCGATAATAATAATAATATTGGAATTGCTTCAACTTCTAGCCCTTGTTATGTCACTGACCAATTACCAACAAGTTATTATTATAACAATAATAGTAACAACTACTACTCTCATCATGCAAGTCTTGTGGACCCACCTATGTCTGAAACGTCAACCTTTCATTCCAATAATAGCAGCAGTAATACTTATGTCAATGGAAACAACAGTAGCACCGAGGATGAGAGAGAAAGCTATGTCAGCACCAATAACAGCGTCTTGAGATTTGAAATCCCAGATATGTTGGATGTCAATGCATTCGTGTAA 978 0.4233 MGRTPCCEKNGLKKGPWTPEEDQKLVDYIHKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSLEEEETIIHLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSLFGSSISHINNNMQHHLNPELLKLATSLFSPNNNNNNSLDNSHNQIISSDVSLSFPQANFLESNNNVDSAYPSNLLHHDLMNTSDYWDADNNNNIGIASTSSPCYVTDQLPTSYYYNNNSNNYYSHHASLVDPPMSETSTFHSNNSSSNTYVNGNNSSTEDERESYVSTNNSVLRFEIPDMLDVNAFV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4381 325 Gene3D - 13 66 - -
Amo13g4381 325 CDD SANT 69 112 IPR001005 -
Amo13g4381 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo13g4381 325 MobiDBLite consensus disorder prediction 272 302 - -
Amo13g4381 325 CDD SANT 16 61 IPR001005 -
Amo13g4381 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Amo13g4381 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 320 - -
Amo13g4381 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo13g4381 325 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo13g4381 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo13g4381 325 Gene3D - 69 116 - -
Amo13g4381 325 SMART sant 66 114 IPR001005 -
Amo13g4381 325 SMART sant 13 63 IPR001005 -
Amo13g4381 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Amo13g4381 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo13g4381 325 PANTHER TRANSCRIPTION FACTOR MYB41 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4381 Amo-Chr13 139773426 139774831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4381 1 325 MYB Transcription Factor Family AT4G21440 53.973 1.99e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g4381 Myb_DNA-binding 8.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4381 K09422 - zju:107421995 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4381 13 139773426 139774831 Amo10g0198 10 2047830 2049265 PCT
Amo10g0198 10 2047830 2049265 Amo13g4381 13 139773426 139774831 PCT