Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4379 ATGGAACAGGCTGTGGGAATATTGTGGGATGCTGGTAACCGTTTGTACAGTTGCATCAAAGTGCACGCTGATTACATTGTGAAGCAAGAGGAGAACCTAACCAAATTAAAAGAAAAGATGGAACATCTTGATAACATTTGCAGAGATGTGGTGATAAGAATTGAGAACGATGAGATCCACGGAGAGAGGCGRAGAAGACATGAAGTCAATGGTTGGCTCCAACAAGTTCGGAATCTCCAACAGGAAATGGAAGAAACTAAAGATCCTCCAGAACCCAACAAAAAATGTCTAATCTGTTATGGACAAAGTAATTGTGTGTCAAAATATAAGTTTGGAAAAAGAGTCCATAAGATGATCTTCAAGGTTAACGAAGTTTTGAGTAAAGGAGAAGGTTACACACACAGTGTTGATATCACTCACCAGCCATCATTGAAGCCGATATATGAGATTCCTCACATAGAGACCGTGGGTGTGGATTCGATGGTAGAGAGAGTGTGGAACAGCCTTCAAGATAAAAATGTGGGCATCATTGGAATATATGGCATGGGTGGGGTGGGAAAAACCACTCTCATGAAGAGAATTCACAATGAGTTTGGAAACCGCAATCACGAATTTGATCTTGTGTTGTGGATTACCATTGCTAAGGATTGTGATAATGCCAAAGTGATGAATGATATTCGAAATAGGTTAGGGGTGAAGGACGATTCTTGGAACAGAAGTAGCGAGCATGAGAAGGTGGGCAAAATCTACCAAGTCCTAAGGCAGAGGAGGTTTGTGTTGATGTTGGATGATTTATGGGGGAAGTTGGAGCTTCAAGAGGTAGGAGTACCGAATCCAAAGAAGGCCGGGTGTAGATCAAAAGTAGTGTTTACGACAAGGGAAGAGGATGTGTGTGATAAGATGCAAGCAGATAAGAAGTTCAAAGTGGAAGTTTTAAGTGAGGAGGAGGCATTTGTCTTGTTCTGCAAGAAAGTGGGTGAAGGGACATTAAAGAGCAATGTGGAGATTCCAAGGCAGGCAAAGAAGATGGCTAAAGAGTGTAAAGGGTTGCCACTAGCACTTGTCACAGTGGGGAGTGCCATGTCTGGAGTCAGGAGTATTGCATCTTGGAGGCAAGCCAAACATGAGTTGAGGAGGAACCCATGGATTGCTTCCGATTTGGAGAAGAATGTGTTCGGTGTTCTCAAGTTTAGCTACGACAGGCTGCCAGATGAAGCGCACAAGAACTGCTTCCTATATTGCGCCGTGTATCCAGAAGACTACGAGATCAAAGTTGAAGATGTCATTGATAGATGGATCGGAGAAGGGTTTCTTGGGAGGAGTAGTAAGAAGAGCATATATGATATGCGTGAGGAAGGCCATTCTATTATTGAAAAATTGAAGCTTTGTTGTTTGGTTGAGGATGTCATGGCTGATATCTTCCAGTGGTGGCCTAGGATCAAGATGCATGATGTGATGCGAGATATGGCACTGTGGATAGCATGCGATCAAGATACTATTAGAGACAAAGTGGTGGTGGAGGAGCACGCTTTCCATCTACATTCCCAAAAGATGGAACTTGTTGAGAAGATTTCCATTATAAGAGCCTCCGGAATGCGCCGGGTACCGCGTTGTCCCAATCTAGTAACCCTGTGTTTGCAAAATCTTGAGGACAATGTTGATTTCTCAAATCTGCAAATCATGTCAAAGTTGAAGGTGTTGGATTTATCAAACAATAGACACATCAGACACCTTCCTAGTGAAATAGGCATGGTGATCAACTTGGAGTTTCTTAACCTGTCACTCTCAGATGTATCCACACAGATTCAGTTGCCAATTGAATTGAAGAACTTGGAGAAATTGAAGGTCCTTCTCATGAAAGATACTTTCACTTCATCAAACATTCTTGAGGTTTTGGAAAGCCTTAAACAGTTGCAGATTCTAAGACTTGGATATGGAGGGAGGGTGGGAGGAGGCCTGTCTTTTAGTGAGGTAGATAATAATCAAGAAGCAATCTTGATAGACAAATTGGAAAGCTTGCCTCAATTGGAGGAACTTTGCATCAACTTAAAAACCATGAGAGGCATCCGAAAATTGCTTAGCTCCACCAAGTTGCAAGGTTGCTTGAGATATGTTTGGCTTAGTTTTATTGATGAGCCAATTGAGATGGCAACATTGTTAGCATCTTGGTCTAAAATGAAGCATTTGGAGCTTATAACTCTACAATATTTGTACAACATTAAGGAAGTTCCATCCATCACTTACACTTGTCACCTAGAAGCACTTCGTGAGGTAGAGATCAACGGATGTGATTCAATAACTCACTTGACATGGCTGAAGCATGCTCAATGCCTTGAGATTCTTCAAGTTAGAAATTGCAATTCAATTCAAGAGTTGGTGAAGGAAGACCAAGGCCAAACGGTGGACATGGATTTGTTTCCACATCTTAGATTTCTTAAACTATCTTTTCTGGTGAGACTCAAGAAAATATACAATGGAGTATTGCCTTTTCATTCATTAAAATTCATCATGGTTGTTGGATGCGATCATCTGCGGACGCTGCCTCTGAATTTCAACTCTAAGGACACATTGATTCAAATAACTGGTGAAACAGAATGGTGGAACAATCTAGTGTGGGATGATCCAACCATTGGAGACGCACTTGATTCCAGATTTAGGCCATTTATTCGTATTTGA 2676 0.4159 MEQAVGILWDAGNRLYSCIKVHADYIVKQEENLTKLKEKMEHLDNICRDVVIRIENDEIHGERRRRHEVNGWLQQVRNLQQEMEETKDPPEPNKKCLICYGQSNCVSKYKFGKRVHKMIFKVNEVLSKGEGYTHSVDITHQPSLKPIYEIPHIETVGVDSMVERVWNSLQDKNVGIIGIYGMGGVGKTTLMKRIHNEFGNRNHEFDLVLWITIAKDCDNAKVMNDIRNRLGVKDDSWNRSSEHEKVGKIYQVLRQRRFVLMLDDLWGKLELQEVGVPNPKKAGCRSKVVFTTREEDVCDKMQADKKFKVEVLSEEEAFVLFCKKVGEGTLKSNVEIPRQAKKMAKECKGLPLALVTVGSAMSGVRSIASWRQAKHELRRNPWIASDLEKNVFGVLKFSYDRLPDEAHKNCFLYCAVYPEDYEIKVEDVIDRWIGEGFLGRSSKKSIYDMREEGHSIIEKLKLCCLVEDVMADIFQWWPRIKMHDVMRDMALWIACDQDTIRDKVVVEEHAFHLHSQKMELVEKISIIRASGMRRVPRCPNLVTLCLQNLEDNVDFSNLQIMSKLKVLDLSNNRHIRHLPSEIGMVINLEFLNLSLSDVSTQIQLPIELKNLEKLKVLLMKDTFTSSNILEVLESLKQLQILRLGYGGRVGGGLSFSEVDNNQEAILIDKLESLPQLEELCINLKTMRGIRKLLSSTKLQGCLRYVWLSFIDEPIEMATLLASWSKMKHLELITLQYLYNIKEVPSITYTCHLEALREVEINGCDSITHLTWLKHAQCLEILQVRNCNSIQELVKEDQGQTVDMDLFPHLRFLKLSFLVRLKKIYNGVLPFHSLKFIMVVGCDHLRTLPLNFNSKDTLIQITGETEWWNNLVWDDPTIGDALDSRFRPFIRI* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4379 891 PRINTS Disease resistance protein signature 176 191 - -
Amo13g4379 891 PRINTS Disease resistance protein signature 252 266 - -
Amo13g4379 891 PRINTS Disease resistance protein signature 347 361 - -
Amo13g4379 891 PRINTS Disease resistance protein signature 559 575 - -
Amo13g4379 891 ProSiteProfiles Leucine-rich repeat profile. 563 585 IPR001611 GO:0005515
Amo13g4379 891 Pfam NB-ARC domain 159 400 IPR002182 GO:0043531
Amo13g4379 891 Gene3D - 399 491 IPR036388 -
Amo13g4379 891 PANTHER DISEASE RESISTANCE PROTEIN RP 14 878 IPR044974 GO:0006952
Amo13g4379 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 414 IPR027417 -
Amo13g4379 891 SUPERFAMILY L domain-like 468 857 - -
Amo13g4379 891 Gene3D Ribonuclease Inhibitor 500 649 IPR032675 -
Amo13g4379 891 PANTHER OS12G0491200 PROTEIN 14 878 - -
Amo13g4379 891 Gene3D - 311 398 IPR042197 -
Amo13g4379 891 Coils Coil 26 46 - -
Amo13g4379 891 Gene3D Ribonuclease Inhibitor 653 865 IPR032675 -
Amo13g4379 891 Gene3D - 149 309 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4379 Amo-Chr13 139758690 139762065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4379 153 851 WRKY Transcription Factor Family AT5G45050 22.746 1.09e-11 67.0