Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4377 ATGGGTAACGAAGAAGACTTCGCCGGAGAACCCAACTCCTTTAGGAAGGAGGCACCCGCCGGAACTTCCAACCTCCTCCGGCGAGCAGCGGAGCTCATTGCCACCGTGCTCTCCCTCTCCCTCTCGATCAGGGCCTTCGCCACCAAATGGCAACTCATCCGGACCAAGCTCGAGGAGCTCCACTCCGGCCTAATCGCCGCCGAGAACTGCGACTCCGGCGAGAACCCACAGCTCACGGGCATCCTCCCATCGGTGATTTCGACCGCCGGAGAGTGCCGCGACTTGGCGCGCCGTTGCTCCGACCTCTCCTACAGCGGGAAGCTCCTTATGCAGAGCGATTTGGACGTGGCGATRGCAAAGCTSGACGGCCACGTCAGCACCCTCTCGGAGATTTACAAAAAGGGAATATTGGCGAATGGGTCTGCCCTCGTCGTTTCAAAACCGAGTCTTGGCGCTTCAAGAGAAGACATAAGGTTCTACGTGAGGGACCTATTAACGAGGATGAAGATTGGGGATTTGGGTATGAAGAAAGTGGCTCTCAGGAACCTGTACGAGGTTGTCGTCGAGGATGAGAGGTACGTTAAGGCCGTTGTGGACGTTGGTGACGTGGTTCATGTGCTGGTTGGGTTTCTTGGTTCAACTGAATCGGGACTCCAAGAGGAGAGTGCAAAGGTTGTTTCTGTGATTGCAGGATTTGGTTGCTACAAGGGCAATTTGGTAAATTCAGGAGTGGTTGCGCCGTTGGTTAGGGTGCTGGATTGTGGGAGCGAAGAAGGGAAAGTTGCTGCAGCGAGGTGTTTGGTGAAGCTCACTGAGAATTCTGATAACGCTTGGTGTGTTTCTGCACATGGTGGTGTCACTGCGTTGCTTAGAATTTGTGATGGTGATGYTGGTGGTTGTGACGGAGATTTGATTGGTCATGCGTGCGGTGTGTTAAGCAATCTTGTTAGTGTTGAAGAGATTAAGAGGTTTATGATTGAGGAAGGTGCGGTTTCTACGTTTATAAGGCTTGTGAGGTCCAGGGATGAAGCCATTCAAGTGAATTCAATAGGCTTCATTCAGAACATTGCCTCTGGTGATGAATTGGTTAAGCAGATGGTGATTAGAGAAGGTGGAATCCGTGCTCTGTTGCGTGTTCTTGATCCTAAATGGCCCTGTTCTTACAAAACAAGGGAGATTTCAATAAGGGCTATTGAGAATTTGTTTTTCTCTCCGCTTAGCTCTGTGAGTGCTTTGATTAGTTACGGTTTTGTGGATAGTTTGCTGTATTATGTTCGAAATGGCGAGGTTTCSATTCAAGAATTGGCGCTGAAAGTGGCATTTCGATTGTCTGGAACGTCCGAGGAGGCSAAGAAATCAATGGGGGATGCAGGTTTCATGGCTGAGCTTGTGAAATTCCTGAATGCGAAATCGTTRGAGGTTCGCGAAATGGCAGCTGAGGCACTCTCTGGGTTGGTTATGTTGCCTAAGAACAGAAAGAGGTTTGTGCAGGATGACCATAACATTGCACTTATCCTTCAATTGCTTGATCCTGAAGAGGGGAATTCAGGTAACAAAAAGRACTTAATCTCAATCTTAATGTCATTGACAAGTTGCAATAGTGGGAGGAAAAAGATTGTTAGTTCTGGTTATGCAAAGAGCATTGAGAAGCTTGCAGATGCTCAAGTTTCTTCTGATGCCAAGAAACTTGCAAAGAAGCTATCCACAAACAGGTTCCGCAGCTTGTTCAGTGGAATCTGGCATTCATGA 1749 0.4854 MGNEEDFAGEPNSFRKEAPAGTSNLLRRAAELIATVLSLSLSIRAFATKWQLIRTKLEELHSGLIAAENCDSGENPQLTGILPSVISTAGECRDLARRCSDLSYSGKLLMQSDLDVAXAKLDGHVSTLSEIYKKGILANGSALVVSKPSLGASREDIRFYVRDLLTRMKIGDLGMKKVALRNLYEVVVEDERYVKAVVDVGDVVHVLVGFLGSTESGLQEESAKVVSVIAGFGCYKGNLVNSGVVAPLVRVLDCGSEEGKVAAARCLVKLTENSDNAWCVSAHGGVTALLRICDGDXGGCDGDLIGHACGVLSNLVSVEEIKRFMIEEGAVSTFIRLVRSRDEAIQVNSIGFIQNIASGDELVKQMVIREGGIRALLRVLDPKWPCSYKTREISIRAIENLFFSPLSSVSALISYGFVDSLLYYVRNGEVSIQELALKVAFRLSGTSEEAKKSMGDAGFMAELVKFLNAKSLEVREMAAEALSGLVMLPKNRKRFVQDDHNIALILQLLDPEEGNSGNKKXLISILMSLTSCNSGRKKIVSSGYAKSIEKLADAQVSSDAKKLAKKLSTNRFRSLFSGIWHS* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4377 582 Pfam Armadillo/beta-catenin-like repeat 320 358 IPR000225 GO:0005515
Amo13g4377 582 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 329 372 IPR000225 GO:0005515
Amo13g4377 582 SUPERFAMILY ARM repeat 143 555 IPR016024 -
Amo13g4377 582 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 582 - -
Amo13g4377 582 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 582 - -
Amo13g4377 582 Gene3D - 160 571 IPR011989 -
Amo13g4377 582 SMART arm_5 273 317 IPR000225 GO:0005515
Amo13g4377 582 SMART arm_5 360 403 IPR000225 GO:0005515
Amo13g4377 582 SMART arm_5 447 487 IPR000225 GO:0005515
Amo13g4377 582 SMART arm_5 318 358 IPR000225 GO:0005515
Amo13g4377 582 SMART arm_5 190 231 IPR000225 GO:0005515
Amo13g4377 582 SMART arm_5 232 272 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4377 Amo-Chr13 139693842 139696068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4377 144 381 U-box Gene Family AT2G23140 25.794 1.38e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4377 - - adu:107480628 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4377 13 139693842 139696068 Amo20g0467 20 5893714 5896866 PCT
Amo13g4377 13 139693842 139696068 Amo10g0202 10 2064054 2067162 PCT
Amo20g0467 20 5893714 5896866 Amo13g4377 13 139693842 139696068 PCT
Amo10g0202 10 2064054 2067162 Amo13g4377 13 139693842 139696068 PCT