Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4374 ATGCGCACTTTCACTTTCTTCCAGCGTCTTTCTAAAGCTTTCCATGGCTACGACTCCCACTTCAAGCTTGTACTCCTCTGCACCACCGTTAGCGGTGGTGGACTTTTGGCATACGGCGAGGCGGTAGCTCAATCGGAAGCGGCGGTAGTGAAGGAGGAGAAGAAGAAGGTGGTGGTGCTGGGGACAGGTTGGGCAGGGACGAGCTTCTTGAAGAATCTGGAGAATCCCAGATATGAGGTCCACGTGGTGTCTCCTCGCAACTATTTTGCCTTCACACCTTTGCTTCCTAGTGTCACGTGCGGCACCGTCGAGGCCCGTAGCATCGTTGAACCCGTTCGCAACATCTTTAGGAAGAAAAATGTGAAAGTAGACTTCAGTGAAGCAGAATGTCTCAAGATTGACGCAGCAAACAGGAAAGTTTACTGTCGGTCAAGTATAAGCAATAATTCGAATGAAAAAGATGAATTTGTTGTGGACTATGACTTCCTCATCATAGCCGTGGGAGCAAATGTAAACACATTCAATACTCCCGGGGTGGTGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAGAAGATCAGAAGAACAGTTATTGACTGCTTTGAGAGAGCAAGCTTGCCTAGTGTAAGTGAGGAAGAGAAGAAGAGAATCCTTCATTTTGCTATTGTTGGAGGTGGTCCGACCGGGGTGGAGTTTGCAGCCTCTCTTCATGACTTCGTCAATGAAGATTTGGTCAAATTATATCCCGGTATAAAAGATTTGGTTAAGATTACGCTTCTGGAGGCAGGGGAACATATTTTGAGCATGTTTGACAAAAGAATCACTTCTTTTGCTGAGGACAAGTTCCGAAGAGATGGCATCGATGTGAAAACTGGATCCATGGTTGTGAAGGTATCTGATAAAGAAATTTCGACTAAAGAAATGAAAAATGGAGGAGAAATCACTACAATGCCATATGGAATGGCTGTCTGGTCAACTGGCATTGGAACTCGTCCATTTATTAGAGATTTTATGACACAAATTGGCCAGATTAACAGGCGTGCTGTTGCTACCGATGAATGGTTGAGAGTTGAGGGAACCAACAATGTGTATGCACTTGGAGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCAGCAATCTTTAAGAAGGCGGACAAAGACAACTCAGGAACCCTCACGGTCAAAGAATTTCAAGAGGTATTGGATGATATCTGTGAGAGATACCCTCAGGTAGAACTGTATCTGAAGACTAGACAAATGAATGATATTGCTGATCTGTTGAAAGAAGCCAAGGGAGATGTTGCAAAGGAATCTATTGAGCTGAGTATCGAAGAACTAAAAACTGCACTTTCTAAAGTGGATTCTCAAATGAAGTTTCTTCCTGCTACAGCACAGGTTGCATCTCAGCAAGGCACCTACCTTGCCAAGTGCTTTAATCGGATGGAAGAGTGTGAAAAGAATCCAGAGGGTCCTATCAGGTTCAGGGGAGAAGGACGCCATAGGTTCAAACCCTTCAGGTACAAGCATTTAGGTCAATTTGCTCCTCTGGGAGGAGAGCAGGCAGCTGCACAGCTTCCTGGTGATTGGGTTTCAATTGGTCATAGCACTCAATGGCTTTGGTATTCTGTCTATGCAAGCAAGCAAGTTAGCTGGCGCACACGGGCATTAGTTGTATCAGACTGGACAAGGCGTTTTATTTTTGGAAGGGACTCGAGTCAAATCTGA 1743 0.4481 MRTFTFFQRLSKAFHGYDSHFKLVLLCTTVSGGGLLAYGEAVAQSEAAVVKEEKKKVVVLGTGWAGTSFLKNLENPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKNVKVDFSEAECLKIDAANRKVYCRSSISNNSNEKDEFVVDYDFLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERASLPSVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVKLYPGIKDLVKITLLEAGEHILSMFDKRITSFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITTMPYGMAVWSTGIGTRPFIRDFMTQIGQINRRAVATDEWLRVEGTNNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVLDDICERYPQVELYLKTRQMNDIADLLKEAKGDVAKESIELSIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQAAAQLPGDWVSIGHSTQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSQI* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4374 580 SUPERFAMILY EF-hand 371 467 IPR011992 -
Amo13g4374 580 SUPERFAMILY FAD/NAD(P)-binding domain 216 375 IPR036188 -
Amo13g4374 580 SMART efh_1 382 410 IPR002048 GO:0005509
Amo13g4374 580 Gene3D - 46 414 - -
Amo13g4374 580 Gene3D - 422 579 - -
Amo13g4374 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Amo13g4374 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Amo13g4374 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
Amo13g4374 580 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Amo13g4374 580 PANTHER NAD(P)H DEHYDROGENASE B2 3 580 - -
Amo13g4374 580 PANTHER NADH DEHYDROGENASE 3 580 IPR045024 GO:0003954|GO:0006116
Amo13g4374 580 SUPERFAMILY FAD/NAD(P)-binding domain 54 273 IPR036188 -
Amo13g4374 580 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Amo13g4374 580 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4374 Amo-Chr13 139626674 139631685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4374 1 580 Chloroplast and Mitochondria Gene Families AT4G21490 73.928 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4374 K03885 - gmx:100809915 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4374 13 139626674 139631685 Amo20g0468 20 5925582 5929621 PCT
Amo13g4374 13 139626674 139631685 Amo10g0206 10 2109252 2113202 PCT
Amo20g0468 20 5925582 5929621 Amo13g4374 13 139626674 139631685 PCT
Amo10g0206 10 2109252 2113202 Amo13g4374 13 139626674 139631685 PCT