Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4352 ATGGCTTCTGCTGCTGCTTCCGTGTCTTCTTCCTCCTTGCCGTCGTCCGGGTTCTGCTACAACCCTGAATGTAAAGAATTGAAGTCTCAAATACCTAAGAAAGGTTGGAGACTCCGTTCCGGAGACCGAGCCGAACTTTGTGATCGATGCGGCTCTGCTTTTGAAGAAGGAAGATTTTGCGAGATTTTTCATTTGAACACTTCTGGTTGGAGGAACTGTGAGACTTGTAGGAAGCGGATTCATTGTGGATGTATTGTCTCAGATAACTCGTTTATGTTGTTGGATCCTGGTGGAGTTGAATGTAATGGATGTGCAAAGGAACATCATATGTCATCAACCCGGCCATGGTCTCAGTCTTTTTCCGCTACTTTATCTGAAAGACTTAGAGACATCTCCACAAATAATTGGAATCAGTTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGCCTATATAATTCTGTTTCTTCATCCAACCTGCAGCCAGGTGTGGCCTCTCTAGTTGAATTGACACATAAACTTGGCAAAATTTATGGAAATGAAAGATTGCCTGCTTTTTCTCTGGGAAAGAAAAATGAAAATTTTCCTGGAATATCCAACTGGAACACTAAGCTTGCATCACAGGAGATAATGCTTGTGAATGGAGCAATGAATGAGGACAAACCTAGTTCATGTTTAAATATTTGCCAGCAGTCTTCTTCTGTAAAGGAGGATTCATCTCCGCAACCTTTTGCATTGCCTGTACCTTATGCATCTCCAAATGAAAGAAATGGTCAAACTGGGGGGAATCAACTACAACAAACCCCTCCAGCTCCTCTAGGAAAGCAATATAGTGGCACTGTTCATTTATCACTTGACACATCAGGTGAAACACAAGTTCGTAATGGACGGCCTCGAGTAGATGCACGAGGAAGAAGCCAGTTACTCCCACGGTACTGGCCCAGATGTACCGATCAGGAGCTACAGCAAATATCTATCGATTCTAATTCTGTCATTACCCCGTTGTTTCAAAAAACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTTCCAAAGAAATGTGCTGAGGCTTATTTCCCTCCAATTTCACAGCCTGAAGGGTTGCCACTCAAAATCCTTGATGCAAAAGGCAAAGAGTGGATATTTCAGTTTCGTTTCTGGCCCAACAATAACAGTAGAATGTATGTTTTGGAAGGTGTCACTCCCTGCATACAGTCCATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGCCGGCTGGAGCCAGAAGGGAAGTTGGTTATGGGATTTCGAAAGGCTTCAACTGCTACCCAATCTGATCAGGACAATGAAGCAAATAAGACCGGAAATGGACACTCCACAATTGGTGAAGTTGAAATGGCTGATCCTAGTTCATGGTCTAAAGTTGATAAATCAGGATACATTGCAAAAGAAGCACTTGGGAGCAAATCTTCAATCTCTAGAAAGAGAAAGAGCAGCATCTTGGGTTCAAAGAGTAAACGTTTAAAAATTGAAAATGAGGATTTGATAGAACTCAAGATTACTTGGCAAGAGGCTCAAGGCCTGCTAAGGCCTCCTCCTGACCATGTCCCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTGCTGGGTAAACCAACCATTTTCACCACTAGTAATGAAGGTGAAAAGATCCAGTGGGCTCAATGTGAAAATTGTCAAAAGTGGCGCAAATTGCCAGCAAGTGCAATTCTTCCCTCAAAATGGACGTGCTCTGACAATTCATGGGACCCAGAAAGATCCTCTTGCTCAGTGGCACAAGAGCTGACTGCAGAAGAGCTCGAGAATTTGCTACCTTCTTGTAATTCAGTTATTTCAAAGAAAATGAAGGCCACTAAGCAAGAGACAGATAATTTTGATGCTATGGAAGGACTTGATACACTTGCGAACTTAGCTATCTTGGGGGAGGATGAGTCACTCCCTACGTCTACCCAGGTTACAACGAAACACCCCCGGCATAGGCCTGGCTGCTCTTGCATTGTTTGCATTCAACCTCCCAGTGGGAAGGGCCCTAAGCATAAGCAGACATGCACATGTACTGTCTGCTCGACCGTGAAACGTCGATTCCTTACCCTACAACAGAAGCGTGAGAAGAAACAAACAGAAAAGGCAGAGACAATACGGAAAAAGCAGCAACCTCCTCCCCCGGGACAATCATCTGAAATAGTGATTGAAGACGACACGTTGCCTTGTAGTAATGCAGGAGATAGCAGCCCAAACCCAAACAAGGATGGAAATGGCGGTTCAGATGACGATCCTAACCGGATAAAATCATCTACCTTACCATTCAAAGGTCAAATCGACCTCAATATCCAGCCTGAGCGAGAGGAAGAGTTGTCGCCGCAATCAGATTCTGGTGGCATGAAGGCACTGCTTGATGGCACAGAAAGACATCTCAGGCAGCTGAGTATTTTGAATTCCGGGGATGCAGATTCTTCAGGTAGCCAGTCAAAGGGAGTCGGAGATGAAACAAGGGAACAAAAACTCAGCAATGGTGTAGTCCTCGGAAATAATGGTCACAATTCTGATAGGGAGCTTGTGCAGCCTTTGACTATGAATGTGTGA 2640 0.4458 MASAAASVSSSSLPSSGFCYNPECKELKSQIPKKGWRLRSGDRAELCDRCGSAFEEGRFCEIFHLNTSGWRNCETCRKRIHCGCIVSDNSFMLLDPGGVECNGCAKEHHMSSTRPWSQSFSATLSERLRDISTNNWNQLAGSGPVPWKQAPSLYNSVSSSNLQPGVASLVELTHKLGKIYGNERLPAFSLGKKNENFPGISNWNTKLASQEIMLVNGAMNEDKPSSCLNICQQSSSVKEDSSPQPFALPVPYASPNERNGQTGGNQLQQTPPAPLGKQYSGTVHLSLDTSGETQVRNGRPRVDARGRSQLLPRYWPRCTDQELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRKASTATQSDQDNEANKTGNGHSTIGEVEMADPSSWSKVDKSGYIAKEALGSKSSISRKRKSSILGSKSKRLKIENEDLIELKITWQEAQGLLRPPPDHVPSIVVIEGFEFEEYEDAPVLGKPTIFTTSNEGEKIQWAQCENCQKWRKLPASAILPSKWTCSDNSWDPERSSCSVAQELTAEELENLLPSCNSVISKKMKATKQETDNFDAMEGLDTLANLAILGEDESLPTSTQVTTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCTVCSTVKRRFLTLQQKREKKQTEKAETIRKKQQPPPPGQSSEIVIEDDTLPCSNAGDSSPNPNKDGNGGSDDDPNRIKSSTLPFKGQIDLNIQPEREEELSPQSDSGGMKALLDGTERHLRQLSILNSGDADSSGSQSKGVGDETREQKLSNGVVLGNNGHNSDRELVQPLTMNV* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4352 879 MobiDBLite consensus disorder prediction 439 463 - -
Amo13g4352 879 Gene3D - 316 443 IPR015300 -
Amo13g4352 879 ProSiteProfiles Zinc finger CW-type profile. 566 616 IPR011124 GO:0008270
Amo13g4352 879 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 15 811 - -
Amo13g4352 879 Pfam B3 DNA binding domain 338 437 IPR003340 GO:0003677
Amo13g4352 879 MobiDBLite consensus disorder prediction 439 458 - -
Amo13g4352 879 MobiDBLite consensus disorder prediction 234 280 - -
Amo13g4352 879 Gene3D - 570 624 - -
Amo13g4352 879 ProSiteProfiles B3 DNA-binding domain profile. 338 439 IPR003340 GO:0003677
Amo13g4352 879 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 15 811 - -
Amo13g4352 879 CDD B3_DNA 336 437 IPR003340 GO:0003677
Amo13g4352 879 MobiDBLite consensus disorder prediction 825 845 - -
Amo13g4352 879 SMART B3_2 338 439 IPR003340 GO:0003677
Amo13g4352 879 MobiDBLite consensus disorder prediction 855 879 - -
Amo13g4352 879 SUPERFAMILY DNA-binding pseudobarrel domain 335 437 IPR015300 -
Amo13g4352 879 Pfam CW-type Zinc Finger 571 613 IPR011124 GO:0008270
Amo13g4352 879 MobiDBLite consensus disorder prediction 718 879 - -
Amo13g4352 879 MobiDBLite consensus disorder prediction 718 734 - -
Amo13g4352 879 MobiDBLite consensus disorder prediction 756 791 - -
Amo13g4352 879 MobiDBLite consensus disorder prediction 255 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4352 Amo-Chr13 139252950 139261768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4352 293 724 B3 DNA Binding Superfamily AT4G32010 57.273 2.47e-162 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo13g4352 B3 7.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4352 - - gmx:100807252 1334.7