Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4336 ATGCCTCCTCTATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGGAATCATGATGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATTCAAGCTACAATTAAGAAATCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGACATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTTCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTATTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGCCTTTTAACTTTAGTGGAAGAAGAGAAAGAATATGCAAAAGAGGGAAAAATTGTGAAAATGATTGTGCTTGAATTAAGTTCAAAAGATCTTACAATGCGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTTCTTACCTCTGGCTATGTGGAGCAGCCTGTTGTAGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGAGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATATTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGGTTGAGCAAGGTGTCAATGGTACCCAGCCATTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTGTTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGATTGGTGGTATTCTGCTTGTGTGTGTGAAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAATTTAAAATAACAGTTGAAGATCATAGTGGGGAGGGTATTTTTCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAAAAATCATGTGCTGATTTGTTTACCGAGGTTCAAATATATGCAAGTCTTGTATGTGGGGATACTTATCCTTCCTTATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTGCCACATGATACATTTTATGGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAGCTTCCCGATTATGATGCTGATGATGAGTCTACTCCAAAAAAGGAGGCTGATTTACACAAATCTGTTCCCTATGGAGAAGGGGATATTGGTGTTAAGAAGAATTCATCAAAGAATTTGATCAAAAGTGAGAAAGTTACTGTTGTTTCCGGAAGGACTGAGTTTGCTTCCTTAATTAATGATGAACATGGAAAAGATGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTAGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACGTTATTGATGCACCTTCCAAATATAGAGAGAAGCTTATTCATGAAAATGATGTTGTCACCTTCAAGGGCAAAAGGAATCTGAATCCCCAATTTGAAGAGGCGGCTGCTGATGTAGATGGGCGTGGGTTCAAGATTGCCAAGGTTAATGGAGTTTGA 1752 0.3761 MPPLFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHDVPNSMEMILLDEHCEKIQATIKKSLLNRFRDHIVEGQVYRMTYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTYFNMFPFSELLNMTQDYDFLVDVIGLLTLVEEEKEYAKEGKIVKMIVLELSSKDLTMRCALFGDYVNQVNHFLTSGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQILFNPDLPEVVEFRQSMVEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTVEELQDNNEEGSFIIFGTIQGIVEDGDWWYSACVCEKGIYPQNGAYYCDFCLKHITNVTPRFKFKITVEDHSGEGIFLLFDREASYLLKKSCADLFTEVQIYASLVCGDTYPSLFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIIAMFELPDYDADDESTPKKEADLHKSVPYGEGDIGVKKNSSKNLIKSEKVTVVSGRTEFASLINDEHGKDEKTPSNDTVSDDLSAELDILLSSPEKETQEVLSHVIDAPSKYREKLIHENDVVTFKGKRNLNPQFEEAAADVDGRGFKIAKVNGV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4336 583 Gene3D - 114 250 IPR012340 -
Amo13g4336 583 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 372 - -
Amo13g4336 583 CDD RPA1_DBD_A_like 19 107 - -
Amo13g4336 583 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Amo13g4336 583 Pfam Domain of unknown function DUF223 43 135 IPR003871 -
Amo13g4336 583 CDD RPA1_DBD_C 277 420 IPR013955 -
Amo13g4336 583 PANTHER REPLICATION FACTOR A 1, RFA1 22 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo13g4336 583 SUPERFAMILY Nucleic acid-binding proteins 275 424 IPR012340 -
Amo13g4336 583 CDD RPA1_DBD_B_like 140 242 - -
Amo13g4336 583 Pfam Replication factor-A C terminal domain 291 373 IPR013955 -
Amo13g4336 583 SUPERFAMILY Nucleic acid-binding proteins 6 112 IPR012340 -
Amo13g4336 583 Gene3D - 6 112 IPR012340 -
Amo13g4336 583 Gene3D - 265 426 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4336 Amo-Chr13 139039008 139041884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4336 11 371 Core DNA Replication Machinery Family AT5G08020 23.810 6.66e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4336 - - adu:107471135 916.761