Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4309 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGTCCTTCTCCTACTCCCAATGAAATTGACGGCTATCCACTTGATAATGTTAGACATTTCTCTGACAAAGAACTGAGATTGGCTACTGATAATTATCATCCAAGATATAAGATAGGACGAGGAGGTTTTGGAATTGTTTACAAGGGAACCTTAAAAGATGGGAGACAAGTAGCAGTGAAGACCCTTTCAGCTGGGTCAAGGCAAGGAGTTCGTGAATTTTTAACTGAGATTAAAACTATATCAAATGTTAAGCATCCAAACCTTGTTGATTGGTCGGTTGCTGTGTTCAAGGCCTAA 339 0.4012 MSCGCFGASTLKKKSPSPTPNEIDGYPLDNVRHFSDKELRLATDNYHPRYKIGRGGFGIVYKGTLKDGRQVAVKTLSAGSRQGVREFLTEIKTISNVKHPNLVDWSVAVFKA* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4309 112 Pfam Protein tyrosine and serine/threonine kinase 51 109 IPR001245 GO:0004672|GO:0006468
Amo13g4309 112 ProSiteProfiles Protein kinase domain profile. 46 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4309 112 Gene3D Phosphorylase Kinase; domain 1 19 108 - -
Amo13g4309 112 SUPERFAMILY Protein kinase-like (PK-like) 23 104 IPR011009 -
Amo13g4309 112 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 104 - -
Amo13g4309 112 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Amo13g4309 112 PANTHER - 1 104 - -
Amo13g4309 112 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4309 Amo-Chr13 138481506 138483062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4309 34 103 Receptor kinase-like Gene Family AT1G29750 60.000 7.40e-23 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g4309 PK_Tyr_Ser-Thr 1.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4309 - - gmx:100775344 186.037