Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4299 ATGGCTGTTCAAGATCAAAGTGGAGTTGCTAGATTACAGGGTGGTCTCACAGTAGGAAATGAAGTATCTTTTGTTTCTCGAGCATACTCAGTTCCACATGTTCAATTGAATGATCAATTTTCCTGCGGAAATGACTATTCCCCCAAGGTGAGGAAACCATATACAATTACAAAGCAGCGAGAGCGTTGGACAGATGATGAACATAAGAAGTTCCTTGAAGCTTTGAAGCTGTATGGCCGAGCTTGGCGTCGAATCGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTGTCCGAGACTCGAGTGGGAACCCTACAAGCCTGGTGGAGCCAATTGAGATTCCACCTCCTCGACCAAAGCGAAAGCCGATGCATCCCTACCCTCGGAAGCTAGTAGAGATCCCCAAGAGGGAAATTTCTAACCTGGAACATTCAGTGAGGTCTAACTCTCCTAAGTCAGCAGATGTGGATCAAGAAAACAAATCTCCCAAGTCAGTACTATCTGCAATTGTTTCGGACACCCTTGGTTCCTCGGATTCAGATACACTGGCTGGAAGTTTATCCCCAGTGTCATCCATGAGTGGCGGTAATACCAGTAATTCTGCACTTGCTGAGCCCAAATCATCATTTGAGGAAGATAGGTCCACACCTCTAGTTGGACTAAATGCCAATTCTGCTCAACATGAGCACCCTCTTGTGAAACTTGAGCTTTCCCACAATGAAAGTGTTTCTACCAAAGATGATGTGGCTGAAGAATCATCCAGCCGCACTCTAAAACTTTTCGGAACAACCCTGTTGTTAACAGATACCTGTACTCCAATCAATGAGGTATCCAAACCTGTACCTATCAATACTATGCATCTTATGCAACTTCAGAGCAGAAATTCAGATGCTACAAAAGATCCTGCAACCGTTGTTGCACCTTGGTGGATTCTTTCACACAACAGACCATTCATACCACTGCACAAGCAGCCTGAGGAGAAGAATCGGGATTCGGATCTTGGGGAATTCGAAACCAAAGAAGTTCAAAAGGAACCGTCATGGAGCGGTTCGAACACTAGTTCAGTTAGTGATGAAGAGAACACTGCAAAAAGTAAGGAGCAAGGCATGAGTCGCATAAGGGTGAGGCCTAGAACTTTTGGCAAAGGGTTTGTGCCATATAAAAGGTGTATGGCAGAAAGAGAAAAGAACCATTACTATTCAACAATGACATGTGAGAAGACGGAAGAACAAAGGATCAAGCTTTCCTTATAA 1287 0.4406 MAVQDQSGVARLQGGLTVGNEVSFVSRAYSVPHVQLNDQFSCGNDYSPKVRKPYTITKQRERWTDDEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVVRDSSGNPTSLVEPIEIPPPRPKRKPMHPYPRKLVEIPKREISNLEHSVRSNSPKSADVDQENKSPKSVLSAIVSDTLGSSDSDTLAGSLSPVSSMSGGNTSNSALAEPKSSFEEDRSTPLVGLNANSAQHEHPLVKLELSHNESVSTKDDVAEESSSRTLKLFGTTLLLTDTCTPINEVSKPVPINTMHLMQLQSRNSDATKDPATVVAPWWILSHNRPFIPLHKQPEEKNRDSDLGEFETKEVQKEPSWSGSNTSSVSDEENTAKSKEQGMSRIRVRPRTFGKGFVPYKRCMAEREKNHYYSTMTCEKTEEQRIKLSL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4299 428 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Amo13g4299 428 MobiDBLite consensus disorder prediction 155 217 - -
Amo13g4299 428 MobiDBLite consensus disorder prediction 333 354 - -
Amo13g4299 428 MobiDBLite consensus disorder prediction 333 386 - -
Amo13g4299 428 Gene3D - 62 109 - -
Amo13g4299 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Amo13g4299 428 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Amo13g4299 428 PANTHER SWI/SNF COMPLEX-RELATED 36 413 - -
Amo13g4299 428 MobiDBLite consensus disorder prediction 355 370 - -
Amo13g4299 428 PANTHER PROTEIN REVEILLE 7-RELATED 36 413 - -
Amo13g4299 428 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Amo13g4299 428 SMART sant 59 107 IPR001005 -
Amo13g4299 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Amo13g4299 428 MobiDBLite consensus disorder prediction 111 226 - -
Amo13g4299 428 MobiDBLite consensus disorder prediction 126 154 - -
Amo13g4299 428 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Amo13g4299 428 CDD SANT 62 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4299 Amo-Chr13 138227268 138230887 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo13g4299 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4299 - - gmx:778060 512.686