Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4294 ATGTCTTTCTCTTTGATGGAAGTATGCAAGAAGAGAAGGCGGTGCCCAAAGATCTTCAGCTTCCAGTCCTTCGCCGATCCCGGGTGCCCCGTCGCTCCCTCCGCCGCCTTCCGCGACAACGTCAGATCGTTCCTCCGAGAGTGCGCGGAGCTCGAGGAGTACGTCGTTCAGAACAGCCCACTCTGGTGCACCCTTTTGCTCAGCGACAAGACCAACGTCATGGCACCTCTCTACACCCTCGAAGAACAAGTTTGCCAATCTTCCCACCCCTTCTGCGACCATTGCCGCTGTGCAGGTTGGAGTGGTCACTTTGTGTCAAAGAGAAGGTATCATTTCATAATTCCAATGGACAATTGGTGGAATAAACCCTTACCTGAGGATGCTATTGATAATCAGGACCATCTCTTGCATGGTGTGATTCACTGCAATGGCTATGGCCATTTGGTCTGCATTAATGGCATTGAAGGTGGCTCCAAGGTCCTCAGTGGTAGAGAGATCATGGATCTATGGGATAGGATCTGCACAAACCTTGGAGCAAGGAAAATTTCAGTGGAAGATGTTTCAAGGAAGCGATCCATGGATCTTCGCCTACTTCATGGTGTTGCATATGGCCACTCATGGTTTGGTAGGTGGGGCTACAAGTTTTGTCGCGGAAGCTTTGGAGTGACAGGCCAAACCTACTATGAAGCAATTGAAGGTCTAGGTTCCTTAGAGCTTGATGAAATAGTGAGAGATTTAAGCAAGACAAAGTGCCATAAAGAGATCAAGCAAATCATTCGCAGCTATAGAGACATGAGTGAAACTCAGATTACCACATTGAGAGATCTTCTAAGGTTCATGCTCACTGTCAAGTCTCGCGTCCCAATGTCCAAGATATCAATAACCCTTGGAGCTCCTCCTTCTTCGGCTTTCATCTCAAGAAATTCAACCAAACAAGGCTTCTTAAGTAGATCAAATCTGGCAAAGGAGAAGTCCGCAAAGTACAAGAAATTCAGCACCGCAGTGGCTAATATGGATAGCAGGTGGCCAACAAGGAGGCTAGAGTTTGCTGCACAGGTGATTGTTGATGCACTGAAGGAGCACAAGGCAATGAACTCGGCTTCAGAGGGGATGACGCGGCAGGATGTGAGGGATGCATCTAGGCTTCATATTGGTGATACCGGCTTGCTCGATTATGTGCTGAAATCACTCAACTATGTGATTGTTGGCAACTATGTTGTTCGCCGCATGGTTAACCCCTCAACAAGGATCCTAGAATACACCATTCATGAGGTTGGCAATGGGTTTAAGTCGCCGGAAACTGTGGTTGAGCCTGAGGCAGCGGCTCTTGTAGACCCTCAAGATGAGCCATTTAGGATGCCTGGTAGTGATGTTTATTGTGATGTGTTCTACCTATACAAAAATGTGCTACTGAGATATCCGAATTCAGAACCAGTGGACTTAGCAATTCAGACGATCCTTGATAGCCGGTATTTTGTGAAGGAATGGGATTACATGGATGAGATGCAGCAGGCTTTGACATTCATCTGCCGGCTTAAGCCGAATTTCGTTGATATTAAAGCTGATTTGAGTAGGGAGCAGCCTTGTGGGGAGATTGTGATGGTTCCCCTGCATGCAACGGTTAGAGACCTGAAGCAAGCTGCAGAGGCAGCACTGAGGGATACCTACTGCATTGCAGAGAGGCTCATAGTCACTGAGATCACTGAATTGAATGGTGCAAGTGATAATGAGGTGCTATTTGGATTAATCCAATCCGGAGTGGAGCTTTCTGTGAGGGGGATTTCCATTGACTTGTGCACTCCATTGAAGTTCCAAGGTGAATCCGACAATTGGAAGGTGAGGTGTGAGTGTGGAGCACAAGACGACGATGGTGAGAGAATGGTGGCCTGCGACATATGTGAGGTCTGGCAGCACACAAGGTGTTGTGGCATTGAGGATTCTGAGACAGTGCCACCTTTGTTTGTGTGCTCCGGCTGCTGCGATTCGCTTGCCCCTCGGCAGATGGAGTCTCCCTTTGCCATGGATTGTGTTGATGATTTTCTTGTTTCACCAGAGCCTACCTTGTTTCTGGAATATGAATGTGGTTACTGA 2091 0.4787 MSFSLMEVCKKRRRCPKIFSFQSFADPGCPVAPSAAFRDNVRSFLRECAELEEYVVQNSPLWCTLLLSDKTNVMAPLYTLEEQVCQSSHPFCDHCRCAGWSGHFVSKRRYHFIIPMDNWWNKPLPEDAIDNQDHLLHGVIHCNGYGHLVCINGIEGGSKVLSGREIMDLWDRICTNLGARKISVEDVSRKRSMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTGQTYYEAIEGLGSLELDEIVRDLSKTKCHKEIKQIIRSYRDMSETQITTLRDLLRFMLTVKSRVPMSKISITLGAPPSSAFISRNSTKQGFLSRSNLAKEKSAKYKKFSTAVANMDSRWPTRRLEFAAQVIVDALKEHKAMNSASEGMTRQDVRDASRLHIGDTGLLDYVLKSLNYVIVGNYVVRRMVNPSTRILEYTIHEVGNGFKSPETVVEPEAAALVDPQDEPFRMPGSDVYCDVFYLYKNVLLRYPNSEPVDLAIQTILDSRYFVKEWDYMDEMQQALTFICRLKPNFVDIKADLSREQPCGEIVMVPLHATVRDLKQAAEAALRDTYCIAERLIVTEITELNGASDNEVLFGLIQSGVELSVRGISIDLCTPLKFQGESDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIEDSETVPPLFVCSGCCDSLAPRQMESPFAMDCVDDFLVSPEPTLFLEYECGY* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4294 696 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 668 - -
Amo13g4294 696 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 668 - -
Amo13g4294 696 SMART PHD_3 614 660 IPR001965 -
Amo13g4294 696 ProSitePatterns Zinc finger PHD-type signature. 615 659 IPR019786 -
Amo13g4294 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 664 IPR013083 -
Amo13g4294 696 SUPERFAMILY FYVE/PHD zinc finger 606 665 IPR011011 -
Amo13g4294 696 CDD PHD_MMD1_like 615 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4294 Amo-Chr13 138151607 138154581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4294 7 665 PHD Transcription Factor Family AT5G22260 31.786 5.32e-117 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4294 - - mtr:MTR_5g077750 1036.56