Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4293 ATGGTGTTGAGGAGTAATTCTTCCTCTAAAAGAGTGAACAAGAATAAGCAAGTGGCCCAACCTGAAATCCAGAAGCCTAGATGGCTTGATGCTTTCCTGAGAAACAAGTTTTTTGAGCAGTGCAAGGATCATCCAGAGCGCAAGAATGAGTTGAACAAATACTGTATAGACTGTGATCAGGCAGTTTGCCAGTATTGCATTTCATTAGGTCATCAAGACCACATCACACTTAAGGTCTACAGACATGTTTACAAAGATGTTGTCTCCATTGGTACTATGGATAAGTATATTGACTGCTCAGAAATTCAGCGCTACAAATCCAACAAGCGATTGGTTATTTCTCTGAATCCTCTCCCGCACAGTGGTTCGACATCCAACAATGAGGCATCATGCAATACCTGCACTAGAAAGTTGAATGAACCGAATCTATATCGCTACTGCTCCATTTCTTGCAAGGTCAAGGCTATTTCGCTAGAACCTAATGATTTGGTTCCTGCCGTAATTCCTGACCAGAACCACAATGCTCCTCAGGAAGGACCGGATATTCCTACTCAGGAAAGACCAGAGGCAAATGCCGAACTCCCAAGGCCAAGAAAGAGAAGAAGAAAGGGAACACCACATCGAGCTCCATTCTTCTAA 639 0.4319 MVLRSNSSSKRVNKNKQVAQPEIQKPRWLDAFLRNKFFEQCKDHPERKNELNKYCIDCDQAVCQYCISLGHQDHITLKVYRHVYKDVVSIGTMDKYIDCSEIQRYKSNKRLVISLNPLPHSGSTSNNEASCNTCTRKLNEPNLYRYCSISCKVKAISLEPNDLVPAVIPDQNHNAPQEGPDIPTQERPEANAELPRPRKRRRKGTPHRAPFF* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4293 212 MobiDBLite consensus disorder prediction 197 212 - -
Amo13g4293 212 Pfam PLATZ transcription factor 81 153 IPR006734 -
Amo13g4293 212 CDD Bbox2 41 79 - -
Amo13g4293 212 SUPERFAMILY B-box zinc-binding domain 38 79 - -
Amo13g4293 212 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g4293 212 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 212 - -
Amo13g4293 212 MobiDBLite consensus disorder prediction 167 212 - -
Amo13g4293 212 ProSiteProfiles Zinc finger B-box type profile. 41 79 IPR000315 GO:0008270
Amo13g4293 212 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 6 212 - -
Amo13g4293 212 Gene3D Classic Zinc Finger 34 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4293 Amo-Chr13 138148701 138150519 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Amo13g4293 PLATZ 9.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4293 - - adu:107457969 414.461