Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4286 ATGTCCATGGCGTCTTCCTCTTCTTGTGGCTCTCGCGAGGGACACTACAGAGGGGTCAGAAAGAGACCATGGGGTCGCTATGCCGCCGAGATACGCGACCCTTGGAAGAAAACTAGGGTTTGGCTCGGCACCTTCGACACACCCGAGGAGGCAGCCATGGCCTACGACGGCGCCGCTCGTTCCCTCCGTGGACCAAAGGCCAAGACCAACTTTCCCCCGTCGCCGCCGCTGGCCACCGCCCTCGATCTCAGCATAGGAACGTGCTGGCCCCCCGTCCCATCACGCCGTGTGGCGCTCCGTGAGTTTCTCCAAACTAGCATCCTCCGTGATCATCGTCCACCACCACCTCCTCCTGCTGCTGCTGCTCAGACACTGCCGGCAGTGGCTGTGAGTGAGGGCGGATCCCACCATGTACTGGAGAGTTCTGAGATGACGTCGTTTTTGGGAGTGACTGGGCGCGGTCTTCCCGTGGATCTGAACGAGCCTCCACCTTTGTGGCTGTGA 504 0.6131 MSMASSSSCGSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAAMAYDGAARSLRGPKAKTNFPPSPPLATALDLSIGTCWPPVPSRRVALREFLQTSILRDHRPPPPPPAAAAQTLPAVAVSEGGSHHVLESSEMTSFLGVTGRGLPVDLNEPPPLWL* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4286 167 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Amo13g4286 167 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Amo13g4286 167 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Amo13g4286 167 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Amo13g4286 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 14 82 - -
Amo13g4286 167 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677
Amo13g4286 167 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Amo13g4286 167 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Amo13g4286 167 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Amo13g4286 167 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4286 Amo-Chr13 138027827 138028649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4286 5 167 AP2-EREBP Transcription Factor Family AT1G28360 47.396 1.53e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo13g4286 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4286 - - gmx:100798369 207.994