Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4283 ATGCCAGCACAGAAGCGGTTGCATGGGTCTCTGGAGGAGCACGAGGATGCTCTGCGCGCCAACAGCGTCGAGAAGCAAGAATATGAAGTCGAATCCGATCGAAGCAACTCTTTGAGCAACGGCGACAAGGAGGAATATGTGGTTATAAAATTGGCAGATGTACGCAAGGAAGTTCAGTGCCCCATCTGCCTAGGCATCATTCGGAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTTTGCAGAGAGTGCATAGACAAATCTATGCGTCTTGGTAACAATGAATGCCCTGCTTGCCGTACACATTGTGCTAGCCGACGCTCACTCAGGGATGATCCAAATTATGATGCCTTGATTGCTGCTCTCTATCCAGATATTGATAAGTATGAGGAGGAGGAATTGGCATTACACGAAGACGAGGTGACTCACAATAAACAGATTCAAGCTTCCATTGCTCAGACTCTTAGACGACAGACAGAAGCATTGGGTAAGAAACGGAATGCTAAATCAGCAGCAGTGGCTTTCGTAAGGAGGTCACAAGGTAACTATCGAACCTCAAATATGAGGAGAAGAAAACGCTTCAGAAATGCAGGTGAACAAGAAGTATCCGATGACAATGAGGGTGTGAATGATAATGAAGGGGGGAAGGGCTCATCTTCCTGTGATGAGCAGACTGAAAACAGACCAAAAAGATGCAAAAGAGGCGGAGAAACACAGTTTCCTCAGCATTCTGCCTCTACTGACGCGGATGTAGCCGGAGAGGAAAATACTCCTGAAGGGGATAGAGATGTCATAACTTCATCTGGTAGTACACTTGCCTGGGGGAAGAATGGACAGCGGAGTCACACCCGAGGAAATGGCAAGAATTCTGCCAATGGGAAAAATTCCAAAAACAGTCGCATCTCCAAGTTGGTTGATCGTCTTCACAGCTCTGAAGAAAATGATGACAGGTCGGATATCTTTCTTGTGGTTGTCTCTATGGATAAACAAAGAGGACCAAATTTGCAGGAGCCATACCTTCAGTGCAAGCCTACATTGTCAGTCAGTTCACTGAGCAAGTATGTTGCAGTTAAGACTGCACAGCAGCCAGATGATGTTGAGTTATGCTTGGTAGAAGAGCCGGGAGAGCCGCAAGTCAATATTATAAGAGGTGAAAGAACAGTTGATCCAAAAAAAGATAAGGTACGTGCTCTAGGAGAACAAGAAACGTTGGCTGAACTGAAAAGTTGTAACCTCATCCGTGGTTATCTGCTCATGGCTTATAAGAGGAAGTTGTAG 1278 0.457 MPAQKRLHGSLEEHEDALRANSVEKQEYEVESDRSNSLSNGDKEEYVVIKLADVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELALHEDEVTHNKQIQASIAQTLRRQTEALGKKRNAKSAAVAFVRRSQGNYRTSNMRRRKRFRNAGEQEVSDDNEGVNDNEGGKGSSSCDEQTENRPKRCKRGGETQFPQHSASTDADVAGEENTPEGDRDVITSSGSTLAWGKNGQRSHTRGNGKNSANGKNSKNSRISKLVDRLHSSEENDDRSDIFLVVVSMDKQRGPNLQEPYLQCKPTLSVSSLSKYVAVKTAQQPDDVELCLVEEPGEPQVNIIRGERTVDPKKDKVRALGEQETLAELKSCNLIRGYLLMAYKRKL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4283 425 PANTHER OS11G0578200 PROTEIN 1 424 - -
Amo13g4283 425 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Amo13g4283 425 SUPERFAMILY RING/U-box 46 131 - -
Amo13g4283 425 SMART ring_2 60 99 IPR001841 -
Amo13g4283 425 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Amo13g4283 425 MobiDBLite consensus disorder prediction 223 237 - -
Amo13g4283 425 MobiDBLite consensus disorder prediction 182 301 - -
Amo13g4283 425 Coils Coil 11 31 - -
Amo13g4283 425 CDD RING-HC_RING1_like 60 100 - -
Amo13g4283 425 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Amo13g4283 425 PANTHER OS11G0578200 PROTEIN 1 424 IPR044592 -
Amo13g4283 425 MobiDBLite consensus disorder prediction 262 299 - -
Amo13g4283 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 130 IPR013083 -
Amo13g4283 425 MobiDBLite consensus disorder prediction 7 39 - -
Amo13g4283 425 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4283 Amo-Chr13 137989799 137994466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4283 51 194 C3H Transcription Factor Family AT2G30580 26.452 1.25e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4283 K10695 - zju:107425269 496.893