Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4278 ATGGATTCTGAGTTCTGGACCTCACGCCTTGCCGCTGCAAAAAGACAGTACGCTCTTCAGCATCATCACCCACACCTAGATCGGTTGGGAATGGATGATTTTGATTTGGAGGAAGAGGTGCGACCAGATTTTCCGTGCCCCTATTGTTACGAGGACTTCGACATCGCCTCCTTGTGTTCGCATCTTGAAGATGAACATTCATGTGAATCCAGGGTCACGATTTGTCCCATATGCTCAGTTAAAGTTGCAAGGGACATGTTGAGTCACATAACACTGCAACATGGGCACTTGTTTAAGTTACAGAGAAGGCGCAGGTTAAGAAGAGTTGCCATCCCAAACAGTCAAACATTGTCACTCTTGGGTCGTGATCTTCGTGAGGCTCATTTACAGGTGCTTCTTGGTGGCAGTGGCGGATATCGGTCATCAAACAGTTCCACAGTATCTAATGCAGCCACTGATCCGTTCTTGTCCTCTCTTATTTTAAATTTCCCTGCTTGTGAAGCTGAAGAAATTTCTAAATCTGTGGTAACCAGTGCTGAAGAGTCTTCTGCAAAGAATACAGCACCTTCACATATATGGAAATCAAGCTTTGATCCGTCGTTGAGCGCTGAAGAGCGGGAGAAAAGGATGAGACAAGCAGCTGGGAGATCTGGTTTTGTGCAGGATTTGTTTCTTTCGACCTTGTTAGGCGACTAA 696 0.4583 MDSEFWTSRLAAAKRQYALQHHHPHLDRLGMDDFDLEEEVRPDFPCPYCYEDFDIASLCSHLEDEHSCESRVTICPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPNSQTLSLLGRDLREAHLQVLLGGSGGYRSSNSSTVSNAATDPFLSSLILNFPACEAEEISKSVVTSAEESSAKNTAPSHIWKSSFDPSLSAEEREKRMRQAAGRSGFVQDLFLSTLLGD* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4278 231 Pfam Drought induced 19 protein (Di19), zinc-binding 43 95 IPR008598 -
Amo13g4278 231 Pfam Stress-induced protein Di19, C-terminal 117 228 IPR027935 -
Amo13g4278 231 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 230 - -
Amo13g4278 231 SUPERFAMILY TRAF domain-like 44 142 - -
Amo13g4278 231 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 230 IPR033347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4278 Amo-Chr13 137900958 137903955 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g4278 Di19_C 4.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4278 - - gmx:100792230 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4278 13 137900958 137903955 Amo13g4278 13 137900958 137903955 ECH
Amo20g0365 20 4650135 4652999 Amo13g4278 13 137900958 137903955 ECH