Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4273 ATGGAGGGGGAGGGTGGTTCAGAGGGAGAGAATAATCAGAGAAGGGGTGGCACAGATGATAATAGCAATGAAAATATCAATGGAAGCAATAGCAAAGTTGCGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACACCCTATCAACTCGAAACCCTCGAGAAAGCTTATGCCTTGGAGACGTACCCTTCTGAGGCTATGAGGGCCGAGCTATCGGAGAAATTGGCGTTGTCTGATCGGCAGCTGCAGATGTGGTTTTGCCACCGGAGGCTGAAAGACAAGAAAGACTTGCCCCCCAAGAAGCCGCCGAAGAAGGCCGTGGAGAAAGTGCGGGAGCCAGAGCCTGAACCAGTGCCGGATTCCCCAGTGGATGACCACAGATTGGGCCCCGAGCTAGGCAATGAGGATGGATCCGGGTCTGGTTCTGGGTCAAGCCCGTTTACCCGGTCAGAGTCCAGGAGTGTGGCGCCACGGGGTTATTATGAATCACAGCAGGCTGCGCTCGAGCTCAGAGCAATTTCTTGTGTGGAGGCACAGTTAGGGGGGCCATTGAGGGAAGATGGACCCATTCTAGGAATAGAGTTTGATGCATTGCCACCAGATGCATTTGGGGCGCCCTTAGCAACCATTGCAGAACAGCAGAAGCGACCAAGTCATGCCTATGACAGTAAAGTTTATGAAAGACATAATGCTAGACCAAATAAGGCTATGGCAAGGGCATTCCATGAATATCAATTTCTACGGAACCAGGCTGGCCCCAGGTCTGATGGTTTTGGACAATATCCCCAACATCATTTACATGATCCGATGGAAGGTCCTGCAAGAAATACCCATTTTGCACATGGAACTGAACAGTTACATAGAAGTCATGCTACCCAAGGTCATTCTTCTCGAGTCCGTATTTTACCTCAACAAGATAAGCAAGGGATTCCTCATCCATCTCCTCCTCAAGATGATGATGTTGCTTCGCAAAAGCAATTGCACACAAATGTAGTGAACACTGGAGTGAACTCTCATTCTACTGATTACCAAATTGTTGGGCCCGAAAATCCCTATAACCCACCAGGTGGACAAGTTTCCCATATCACTACAATGCAGATTGAGAAAAAACGAAAGAGTGATGATGCTAGAAGTGCAAGGGAAGTTGAAGCCCATGAGATGAGGATCAAGAAAGAGCTTGAGAAACAAGATAACCTTAGACGAAAGAATGAAGAGCGAATGAGGAAAGAAATGGAGAGACAAGATCGTGAAAGAAGGAAGGAAGAAGAAAGGTTGATGCGTGAGAGACAGCGAGAAGAGGAAAGATTAAGGCGTGAGCAAAAACGTGAGCTCGAACGAAGGGAAAAGTTTTTGCTGAAAGAAAATTTGAAAGCTGAGAAAATGAGGCAAAAGGAAGAGCTTCGCAAAGAAAAAGAAGCAGAGAGACGCAAAGCTGCCTTGGAGAAGGCAACTGCTCGTAGAATAGCCAAGGAATCCATGGAACTAATTGAAGATGAACAACTGGAATTGATGGAGCTTGCTGCTTCAAGCAAGGGATTGTCCTCTATAATTCATCTTGATTTTGATACTCTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTTTTCCCACCTAAGAGTGTAAAGCTAAGAAAACCATTTGCGATCCAACCCTGGATTAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAAATTTTTGATTACTTTTGCTGATATTCTTGAGTTGTGGCCTTTTACTCTCGATGAGTTTGTGCAAGCTTTTCATGATTATGATTCAAGACTGTTGGGTGAAATACATGTTGCTCTCCTTAAGGTGATAATAAAAGACATTGCAGATGTTGCAAGGACACCTTCCACTGGATTAGGAATGAGCCAAAATGGTGCAGCTAATTCAGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGTAATTGGCATAAGCACTTAAATCAGTTGACATGGCCAGAAATTTTTCGACAGCTAGCATTAGCAGCAGGTTATGGACCACAGTTGAAGAAAAGAAATATTACATGGTCATATGCAAATGATAAAGATGAGGGCAGGAGTTGTGAAGATATCATTTCTACACTTAGAAATGGTTCAGCAGCTGAACATGCTGTGGCAAAAATGCGGGAGAGAGGTCTACTAGCACCTCGYAAATCAAGGCACCGSTTAACTCCTGGAACAGTAAAGTTTGCTGCATTTCATGTTCTCTCACTTGAAGGTGGTGAAGGATTGACAGTACTAGAACTTGCAGAAAAAATTCAGAAATCRGGCCTTCGGGACCTGACAACTAGCAAGACACCYGAGGCKTCGATTTCTGTCGCTTTGACAAGAGATGCTAAGCTTTTTGAYAGAATAGCTCCATCGACATATCGCGTACGTACTGCATTTAGAAAGGATCCYGCGGATGCTGAGTCTATTCTTTTAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCTGATGAGGTTGAACGAGAAGACGATATTGAAAGAGATGATGTTGAAAGATATGATGATGTAGAAAGAGAAGAAGAGTCAGAAAGTGAAGAAGTTGATGATGATCCTGAAGTTGACGATTTGCTAGGTACTTCAAGTGCTAACAAAACATCTGTTCTGTGTGATGATTTCTCATCTATTGGAAAAGAAAGTTTGGGTCATAAGGTAGAACTTATTCAAGATCAGTTTGAGAAGGATCTTCCGGAGAATGGTACTAAGGATGTGGATGGTTCTAAAGATGCTCATCTTCCAGATGCTATCACTGGACAACCCGTTATTACAAACTTTGAGGAAGATAATATGGAAATTGATGAAAGCAAGACTGGAGAGTCATGGGTTGAAGGGCTTGCAGAAGGAGAATATTCTGATCTGAGTGTAGAGGAACGTTTAAATGCTCTTGTTGTATTGGTTGGTGTAGCAAATGAAGGAAATTCAATCCGCGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCTCAGATAGATAAAATTCGACTGAGAGATGATAATGTAAATAAATCAGATTTTCCATCTATCAATGGGAATAAAGTTGAACCACAATACACAAGTCCTGCTGTGGGGGGGAACCAAAGCCCATTGCTTGACATAAACATTGACAATAATAATAATAATGAGGCATCGCCTAGCACTGCAGAAAATAAAAAGGCTGCAGTTGTACAGAACCTTGCCATGGAAAAGCCCTCAATAGGTCAAGATTACTGCATTGGTCCAGATAACCCTCAAACTCAACTATCTGCTCCCTATTCGAAAAGGTCTCGTTCTCAGTTGAAATCATATATTTCTCACATGGCAGAAGAGATGTCTGTATACAGGTCTTTACCCCTTGGTCAAGATCGCAGACATAATCGCTATTGGCAATTCGTTGCATCTGCTTCTTGCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATATCTTGATGGCAATTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCTCTTTTTAATTCACTGGATTTGCGTGGGATCAGGGAATCTCATTTGCGCATAATGTTGCAAAAGATTGGAAGTTCCTTCAAAGAAAATGTTAGGAAGAATGCACAATCTGCCAATATTGGAAGCAGAGATGAAACTAATATTAAAAATGAAGCTGATGAAGCAGAGTCCAGTCCTGATTGCCATGCATTGTCTGACAGTCCCAGCAGTACACTCTGTGGCTTGAACTCTGATACATCTGAAACTTCTTCATCATTCAAAATTGAGCTTGGGAAAAGTGAGAGTGAGAAGAAAGGTGCCTTGAGAAGGTATCAAGATTTCCAGAAATGGATGTGGAAAGAATGCTATAACTCATCCATATTATCTGCAATGAAATATGGGAAAATGAGATGCAAACCTCAGGTGGACATCTGTGATATCTGCCTCAACCCTTATTTCTTTGAAGACTCCCATTGCAATTGTTGCCATCGTACTTTTCCCTCAAATAACGGATTTAATTTTTCAAAACATATATTTCAATGTGGGGGCAAGTTGTCCAAAGATATTTGTATTCTGGATTGTTCTCTTCCCTTGCGGACAAGATTGCTTAAGGCCCTGCTGGCTTTTATTGAGGCATCTGTTCCCTCCGAAGCATTTCAATCAACTTGGACAGAAGATACTAGAAGGCATTGGGGTTTGAAGTTAAGCAAATCATCTTCTGTCGAGGAACTTCTTCAGTTATTGACTGTATTTGAGAGAGCAATAAAGCGAGATTTTTTATTGTCATCCTTCTCAACAACACAAGAATTGTTGGGATCAAGCAGTATGTCAGAGAGTGCTTTTACCGATCCTGAATCTGTTGCTGTACTTCCATGGGTTCCACAGACCACCTCAGCTGTGTCTCTCAGACTCTCTGAGTTTGATGCGTCCATTAGCTATGTTCAGCTTGAAAAATCTGAGCATCGCAGGGAGAAAGAAACTATAGAATACATGCTTCCTTCAAGATCTAATCCTTTCAAATCTAGTAGAATAGTGGAACCAGCAGACTTGGACCATGATGAATTCATGAAAGTTAGGTCTGCTCCCATGAAAATTGTACAAAGTGGCAATAAACGTGGACGGGGGAATAGTGATAAAGGACGGGGTAAAAAGATAGCTAAAAGAATGCATGATTCCAAACAAGATACTGGCCGCCGCAGTGTTAAGGTCACAGAGAATCTTAGTCAAAGACTAAAACAGCAGGGGCGAGGAGCACAAGGACAAAGTGGTGGACGTGGTCGCCGAACTGTCAGGAAAAGACGAGTGGAAAAGAGGGCTGTTGAAGATTTGCTGCTGGGCCACAAGGCTGGCACACACAGTTCCAATATTGTTAGAGAACCATTGAGAAACCTGGATGAGGAATGGGATGATGATGAAAAGGCAAGTCCCATGACTTCCATCCACATGGGGGCTGTCGACAATAGTAACAGTGCCGAAGAGGCAGATTCTGATGACAATGCTCAAGTAGCAGAGTCCAACGACAATGCTCAAGCAGCAGATTCGGATGAAAATGCTCAAGAAGTGGATTCCGATGACAATCCTCTAGAAGTGGACTCAGATGACAATGCTCAAGCAGTGGACTCGGATGACAATGGCCAAGCAGTGGAATATGATCAAGGAAACTGGGGAATAGGTTTCAATAACACCCCCAACAGGTGGAGTAGGGATGTGGTTGGAATGATCGATGAAGATGTAGAAGCTTCAGACGAGGACAATGACAACAATGTTGGGCTTGAAGAGAACGAAGAGGAAGAATCAGAGGGTGATGATGTTTTGAGTGAGGAGGGTTCAGATGGAATTGCAGATAGAGTTTTGAATGATGACTCGGACTCTGATGATTCTGAAGATTCATCTGATTAG 5451 0.4311 MEGEGGSEGENNQRRGGTDDNSNENINGSNSKVANSNEGQSKPKRQMKTPYQLETLEKAYALETYPSEAMRAELSEKLALSDRQLQMWFCHRRLKDKKDLPPKKPPKKAVEKVREPEPEPVPDSPVDDHRLGPELGNEDGSGSGSGSSPFTRSESRSVAPRGYYESQQAALELRAISCVEAQLGGPLREDGPILGIEFDALPPDAFGAPLATIAEQQKRPSHAYDSKVYERHNARPNKAMARAFHEYQFLRNQAGPRSDGFGQYPQHHLHDPMEGPARNTHFAHGTEQLHRSHATQGHSSRVRILPQQDKQGIPHPSPPQDDDVASQKQLHTNVVNTGVNSHSTDYQIVGPENPYNPPGGQVSHITTMQIEKKRKSDDARSAREVEAHEMRIKKELEKQDNLRRKNEERMRKEMERQDRERRKEEERLMRERQREEERLRREQKRELERREKFLLKENLKAEKMRQKEELRKEKEAERRKAALEKATARRIAKESMELIEDEQLELMELAASSKGLSSIIHLDFDTLQNLESFRDSLCVFPPKSVKLRKPFAIQPWINSEENVGNLLMVWKFLITFADILELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIADVARTPSTGLGMSQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALAAGYGPQLKKRNITWSYANDKDEGRSCEDIISTLRNGSAAEHAVAKMRERGLLAPRKSRHRLTPGTVKFAAFHVLSLEGGEGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFDRIAPSTYRVRTAFRKDPADAESILLEARKKIQIFENGFLAGEDADEVEREDDIERDDVERYDDVEREEESESEEVDDDPEVDDLLGTSSANKTSVLCDDFSSIGKESLGHKVELIQDQFEKDLPENGTKDVDGSKDAHLPDAITGQPVITNFEEDNMEIDESKTGESWVEGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKIRLRDDNVNKSDFPSINGNKVEPQYTSPAVGGNQSPLLDINIDNNNNNEASPSTAENKKAAVVQNLAMEKPSIGQDYCIGPDNPQTQLSAPYSKRSRSQLKSYISHMAEEMSVYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYLDGNWRLIDSEEAFDALFNSLDLRGIRESHLRIMLQKIGSSFKENVRKNAQSANIGSRDETNIKNEADEAESSPDCHALSDSPSSTLCGLNSDTSETSSSFKIELGKSESEKKGALRRYQDFQKWMWKECYNSSILSAMKYGKMRCKPQVDICDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHIFQCGGKLSKDICILDCSLPLRTRLLKALLAFIEASVPSEAFQSTWTEDTRRHWGLKLSKSSSVEELLQLLTVFERAIKRDFLLSSFSTTQELLGSSSMSESAFTDPESVAVLPWVPQTTSAVSLRLSEFDASISYVQLEKSEHRREKETIEYMLPSRSNPFKSSRIVEPADLDHDEFMKVRSAPMKIVQSGNKRGRGNSDKGRGKKIAKRMHDSKQDTGRRSVKVTENLSQRLKQQGRGAQGQSGGRGRRTVRKRRVEKRAVEDLLLGHKAGTHSSNIVREPLRNLDEEWDDDEKASPMTSIHMGAVDNSNSAEEADSDDNAQVAESNDNAQAADSDENAQEVDSDDNPLEVDSDDNAQAVDSDDNGQAVEYDQGNWGIGFNNTPNRWSRDVVGMIDEDVEASDEDNDNNVGLEENEEEESEGDDVLSEEGSDGIADRVLNDDSDSDDSEDSSD* 1817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1253 1273 - -
Amo13g4273 1816 CDD homeodomain 44 93 IPR001356 GO:0003677
Amo13g4273 1816 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 963 1006 IPR028942 -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1 52 - -
Amo13g4273 1816 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 859 1687 IPR044977 GO:0006357
Amo13g4273 1816 ProSiteProfiles DDT domain profile. 560 619 IPR018501 -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 94 161 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 18 48 - -
Amo13g4273 1816 Pfam HB1, ASXL, restriction endonuclease HTH domain 742 810 IPR007759 GO:0006355
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1760 1792 - -
Amo13g4273 1816 Pfam Homeodomain 42 98 IPR001356 GO:0003677
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1685 1700 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1243 1273 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1551 1619 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 843 882 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1558 1584 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 140 155 - -
Amo13g4273 1816 Pfam DDT domain 561 616 IPR018501 -
Amo13g4273 1816 PANTHER HOMEOBOX DOMAIN PROTEIN 12 858 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 94 135 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 843 887 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 255 280 - -
Amo13g4273 1816 SMART HOX_1 41 103 IPR001356 GO:0003677
Amo13g4273 1816 SMART testlast3 560 619 IPR018501 -
Amo13g4273 1816 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 12 858 IPR044977 GO:0006357
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1701 1722 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1585 1604 - -
Amo13g4273 1816 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Amo13g4273 1816 MobiDBLite consensus disorder prediction 397 442 - -
Amo13g4273 1816 Gene3D - 26 100 - -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1638 1658 - -
Amo13g4273 1816 ProSiteProfiles HARE-type HTH domain profile. 742 811 IPR007759 GO:0006355
Amo13g4273 1816 SUPERFAMILY Homeodomain-like 29 98 IPR009057 -
Amo13g4273 1816 PANTHER HOMEOBOX DOMAIN PROTEIN 1695 1816 - -
Amo13g4273 1816 Coils Coil 385 487 - -
Amo13g4273 1816 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1695 1816 IPR044977 GO:0006357
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1672 1816 - -
Amo13g4273 1816 PANTHER HOMEOBOX DOMAIN PROTEIN 859 1687 - -
Amo13g4273 1816 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1142 1214 IPR028941 -
Amo13g4273 1816 MobiDBLite consensus disorder prediction 1643 1658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4273 Amo-Chr13 137820914 137830642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4273 4 1748 Homeobox Transcription Factor Family AT1G28420 47.756 0.0 1353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo13g4273 WSD 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4273 - - ahf:112733536 3120.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4273 13 137820914 137830642 Amo13g4273 13 137820914 137830642 ECH
Amo20g0356 20 4586511 4596112 Amo13g4273 13 137820914 137830642 ECH
Amo13g4273 13 137820914 137830642 Amo20g0356 20 4586511 4596112 PCT
Amo20g0356 20 4586511 4596112 Amo13g4273 13 137820914 137830642 PCT