Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4266 ATGACATGGTGCAATAGATCATCAGTTGTGGAGAGGGGAATCGAAATAATCAACCACCCTAATCTCAATATTATTGCAATCCCTAGAAATAGTAATGACAATAATAATAGTGTTATTAGTGTTACTCATCACGCAAATACTCCTCCTAAACCAACCGAAATCCGAGCCGTTACTTGCCCCTCTTGTGGTCATAACATTCAAATACAACAAGATCAGGGTGGGGGAATTCAAGACTTGCCAGGATTGCCAGCTGGAGTGAAATTTGATCCGAATGACCAAGAGATACTGGAGCATTTGGATGCAAAAGTGCAGTCTGATGTGAGAAAGCTTCATCCTCTAATTGATGAGTTCATACCAACTCTTGAGGGCGAGAATGGAATTTGCTATACTCACCCAGAGAAGCTTCCAGGAGTAAGCAAAGATGGACAAGTGCGTCACTTCTTTCACAGGCCTTCAAAAGCATACACAACGGGAACAAGGAAGAGAAGAAAGGTTCACACCGACCAAGAAGGAAGCGAGACTAGGTGGCACAAAACTGGCAAAACCAGACCCATCTCTGTGGCTGGTTCCGTTAAGGGTTTCAAGAAGATTCTTGTTCTCTACACCAACTATGGCAGGCAGAAGAAGCCCGAGAAGACCAACTGGGTCATGCATCAGTACCATCTCGGCTCCAACGAAGAAGAGAAAGACGGCGAGCTCGTCGTTTCTAAGGTTTTCTATCAAACACAGCCTCGACAATGTGCAAATAAGGATCCTTATGATGAAAGATTATTGATGACTTCACAAATCAACAGTGTCAATGACATTAGCATGCACGCACTACCCAAGAACAATGCAGGTTTTGTGGATTATTATAACCCCGGTTTCATGAATATGAATTATGAACAGATGAACGAGACTACCTCACCGCAACTGATTCCGAATATGGTGGTGCAAGGTGACAGCTCTTCTTTCATTCGGTTAGCCATGGATGCAAACAAACCCAGGTTGGACAGAAAGTAG 1002 0.4361 MTWCNRSSVVERGIEIINHPNLNIIAIPRNSNDNNNSVISVTHHANTPPKPTEIRAVTCPSCGHNIQIQQDQGGGIQDLPGLPAGVKFDPNDQEILEHLDAKVQSDVRKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVHTDQEGSETRWHKTGKTRPISVAGSVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCANKDPYDERLLMTSQINSVNDISMHALPKNNAGFVDYYNPGFMNMNYEQMNETTSPQLIPNMVVQGDSSSFIRLAMDANKPRLDRK* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4266 333 ProSiteProfiles NAC domain profile. 82 241 IPR003441 GO:0003677|GO:0006355
Amo13g4266 333 MobiDBLite consensus disorder prediction 161 180 - -
Amo13g4266 333 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 317 IPR044799 GO:0003700
Amo13g4266 333 MobiDBLite consensus disorder prediction 159 182 - -
Amo13g4266 333 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 317 - -
Amo13g4266 333 Gene3D NAC domain 91 245 IPR036093 GO:0003677|GO:0006355
Amo13g4266 333 SUPERFAMILY NAC domain 77 241 IPR036093 GO:0003677|GO:0006355
Amo13g4266 333 Pfam No apical meristem (NAM) protein 83 222 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4266 Amo-Chr13 137684592 137688464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4266 1 327 NAC Transcription Factor Family AT1G28470 58.209 4.77e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g4266 NAM 5.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4266 - - adu:107480763 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4266 13 137684592 137688464 Amo13g4266 13 137684592 137688464 ECH
Amo20g0349 20 4513621 4517287 Amo13g4266 13 137684592 137688464 ECH