Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4258 ATGGCGGGTTTGATTGATCTGAACACCACGGAGGACGATGAAACGCCGTCGTATGGTTCCTACGCTGCTTCTCCATCTTCTTCCTCCTCGCACTCGGGAACAAGCACTGCTTCTGTTTCAGCTTCAGCTCCTGTTGTTCCTGGTTCTTCTTCTAATTCCGTGTGTTTGGAGCTGTGGCACGCGTGTGCAGGTTCAATGATCTCGTTGCCGAAGAAGGGAACTCTTGTTGTGTACTTCCCACAGGGACACTCTGAGCAGCAACTTCACGATTTTCCTCTCTCTAACAACAATAACAGCATCCCACCCCATGTGTTCTGTCGCGTTCTCGATGTTAAGCTCCATGCAGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTTTTGCTTGTTCCTGAAAATGAGCAAAAATTTCAGGAAGGGGATATTGAGGCTGATGGTGAAGAGGAGGACACGGATGCTGTGATGAAGGCAACAACACCCCACATGTTTTGCAAGACTCTGACAGCTTCTGATACCAGCACTCATGGTGGATTCTCGGTTCCCCGTCGTGCAGCTGAAGATTGCTTTCCTCCGCTGGATTATAGTCAACAGAGGCCATCACAAGAGCTTGTAGCAAAGGATCTGCATGGCCGGGAATGGAAGTTTCGACATATTTACAGGGGGCAGCCACGAAGGCATTTGCTTACCACCGGATGGAGTGCATTTGTGAACAAGAAGCAGCTGGTGTCTGGAGATGCTGTCCTGTTTCTTAGGGGGGCAGATGGTGAACTGAGATTGGGAATTCGTAGGGCAGGTCAATTGAAAAGTGATGGTAAATTTTCAGTTCTCCCTCACCAGCAGTTGAATCATAGCACTCCTGTGGAAGTGATTAATGCTCTGTCTTCAAGATGTGCCTTCAGTGTTCACTATAACCCAAGGGTTAGTTCATCAGACTTCATCATACCTGTCCACAAATTCTTGAAGAGCCTTGATTATTCATATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACCGAAGATGCTGCAGATCGAAGAATCACAGGATTAATTATTGGGATTAATGATGTTGATCCTGTCAGATGGCCCGGATCAAAATGGAGATGCCTGCTGGTAAGGTGGGATGACTTAGAAACCACACGGCATAACAGGGTTTCTCCATGGGAGATTGAGCCATCAGGTTCTGCTTCCACTGCCAGTAGCCTGATGACAGCTGGTTTGAAGAGGAGCAAGATTGGATTGCCTTCAGCACAGCTAGAATTTCCAGTTCCCAATGGGATCAGTACATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATAATCCTGTCAATGGTATTAATGCTCAGTGTCACCAATTATCGGAACTAAGAAGGTGCTATCCTGGATTTACCACAGCAGGACATGGTACAATCCCACAAGTGAGTTCGGATGCTTCCTGCAATGGCATAGGCTTTGGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAATGGTCGCCTCGGAGCTTTTGATGGTTACCAGATGCTAAGGTCCAGAAATGGATGGTCTGCGCATATGAATAGCAATTCTTCTCATTTGCATGCACCCTTTCCATCTGGTCAACTCTCATCTCCATCATCCGTGTTGATGTTCCAGCAAGCATTTAATCCAGTTTCAAACTCTGATTATAGCAACAAAGCTAATCAGGTGAAGGGTGGTAAAGCACTTCAACGAGGTTCATATGCTTCTGAAGTTGATGGTGGAACGAATGCTTCCTTCCCATCTTATGAGACAACTTTCCATGGGAAAGCTCAGGAAGGAAAAAATTCTTTCACTTTTTTAAATCTGCATGATCAGTTGGGTGGTAGTCCACGTTCACCTGATTCAAGATCAGAGCCGAGAGGAAGTCAAGAGCTGGTTTCTTCATGTAAAAGCAACTGCAGAGTCTTTGGTTTTTCACTAACCGAGGGTGCTCCCGTTGCAAGTGAAGAGACTGACCCCTCTACAGTCACTTTTCAATTAAATTCTGGGCCTTCTTTTACAAGACATTGCCAATGA 2100 0.459 MAGLIDLNTTEDDETPSYGSYAASPSSSSSHSGTSTASVSASAPVVPGSSSNSVCLELWHACAGSMISLPKKGTLVVYFPQGHSEQQLHDFPLSNNNNSIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENEQKFQEGDIEADGEEEDTDAVMKATTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNKKQLVSGDAVLFLRGADGELRLGIRRAGQLKSDGKFSVLPHQQLNHSTPVEVINALSSRCAFSVHYNPRVSSSDFIIPVHKFLKSLDYSYSVGMRFRMRFETEDAADRRITGLIIGINDVDPVRWPGSKWRCLLVRWDDLETTRHNRVSPWEIEPSGSASTASSLMTAGLKRSKIGLPSAQLEFPVPNGISTSDFGESLRFQKVLQGQEILGVNNPVNGINAQCHQLSELRRCYPGFTTAGHGTIPQVSSDASCNGIGFGESFRFQKVLQGQEILPSQPYGNGRLGAFDGYQMLRSRNGWSAHMNSNSSHLHAPFPSGQLSSPSSVLMFQQAFNPVSNSDYSNKANQVKGGKALQRGSYASEVDGGTNASFPSYETTFHGKAQEGKNSFTFLNLHDQLGGSPRSPDSRSEPRGSQELVSSCKSNCRVFGFSLTEGAPVASEETDPSTVTFQLNSGPSFTRHCQ* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4258 699 PANTHER AUXIN RESPONSE FACTOR 46 685 - -
Amo13g4258 699 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Amo13g4258 699 MobiDBLite consensus disorder prediction 629 651 - -
Amo13g4258 699 SUPERFAMILY DNA-binding pseudobarrel domain 156 278 IPR015300 -
Amo13g4258 699 MobiDBLite consensus disorder prediction 1 43 - -
Amo13g4258 699 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Amo13g4258 699 SMART B3_2 162 264 IPR003340 GO:0003677
Amo13g4258 699 Gene3D - 160 263 IPR015300 -
Amo13g4258 699 Gene3D - 325 399 - -
Amo13g4258 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 685 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo13g4258 699 Pfam Auxin response factor 289 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo13g4258 699 MobiDBLite consensus disorder prediction 673 699 - -
Amo13g4258 699 MobiDBLite consensus disorder prediction 676 699 - -
Amo13g4258 699 MobiDBLite consensus disorder prediction 10 43 - -
Amo13g4258 699 CDD B3_DNA 160 262 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4258 Amo-Chr13 137586755 137592025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4258 161 513 B3 DNA Binding Superfamily AT2G33860 59.777 1.33e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo13g4258 B3 8.6e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4258 K14486 - gmx:100808119 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4258 13 137586755 137592025 Amo13g4258 13 137586755 137592025 ECH