Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4250 ATGAATTTCCATTCAAATCTTTCTCAAGCACCTGCAAGAAGTTGTTGTCTCTACTTCTATTTATTCATCTCCTTTCTTCTCCAAGTTGAGGCTACTGCTAATGGAGACAACAAAGTCATATCTATAGGCGCAATCATCGATGTTAACTCGCGTATTGGGAAAGAACAGCTAGTAGCCATGGACATTGCAGCTCAAAGTTACAATAACACTTCAAAGACCTACAAACTGGCTCTTCATTTTCAGAACCCCACCATGAATCCCTTAAAAGCCACTTCCATTGCTGAAGATATGATTAAAAATCAGAACGTGGAAGTGATTGTGGGAATGCAAACATGGACAGAAGCAGCTTTGGTAGCTGAACTAGGAAGCCAGGCTCAAGTTCCTGTCATATCCTTGGCAGCACCTACTGTTAGCTCACCCTTGATGGCAAATCGATGGCCTTTTTTGGTGAGGCTAGATAACAAGGGCACTGCATATTCAAAATGCATAGCAGATATAGTTTATGCTTATGGCTGGCAAAGAGTAGTAGCCATTTATGAAGATGATGGCTACGGTGGAGATAATGGTATGGTAGGTATGCTATCTGAGGCACTCCAAGATGTAGGTTCAATGATTGAGTATCGCTTAGCACTTCCATCACCTTCTTATCTGCCTGATCCTGCTGAATTTCTTCGCAACGAGCTGCTAAAGCTAATTGAAAATACGCAATCTCGGGTGTTCATTGTTCTTCAATCATCATTAGATATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGTCTTGTGGATAGAGAATCAGTCTGGATAATTCCAGAGAGTATAACTAATCTATTGGATTCTGTCAATAAGTCTGCTATTTCCTATATGGAAGGGGCTATAGGGATCAAGAACTACTACTCTGAAAATAGCACAGAGTATAAAGATTTTGAAGCTCAGTTCCGGAGAACATTTCACTCCAAGTATACCGAGGAAGATAACCGCAACCCAGGATTCTACGGTCTGCAAGCATATGACAGCATTAAAATTGTTGCAAAAGCAGTCGACAGAATAGCCAGTCACAATAGTAGTAGCAGCAGTAGTGGGAAGACTTTACTAAGAGGAATATTGTCTAGCAAATTCCTTGGTTTAAGTGGAGAAATTCAATTTCAAGAATTGCAGCTCATGCAGAACCCTACCTTAAGGATTGTTAATATTGGTGGGAGGAGTTATAGGGAACTAGATTTTTGGAGTCTAGAACATGGATTTACCAGTAGATTAGGAGAAGGTGGAAATGATACTTCTAGGAACACAGAGGGTTTAAGTGGAGTGGTAATTTGGCCAGGGAAATTGTCGAGAGTTCCAAAAGGGTGGAATCTGCCTACTAAGGAAAATCCAATGAAAATTGCAGTGCCAGGAAGAACTTCATTTTCCAAGTTTGTCAAGGTCGATTATGGTGAGAATGGAAAGCCAAATATATATAGTGGATTCTGCATTGAAATTTTTGATAAGGTGTTAGAACTATTGGGTTATGATTTGCCATATGAGTACTATCCCATCAATGGAACCTATCCTGACCTGGTCCAACTTGTCTATAACAAGACTTATGAGGCTGTTGTTGGGGACATAACCTTACTAGCAGACAGAATGCCATATGTAGATTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGGTAGTTCCATCAAAGTCAGATGAATCAGCATGGATGTTCATGAAGCCTTTCACCTGGCAAATGTGGGTGGTAACTGCTGCTATCTTGTTCTACACAATGTTGGTAGTGTGGTACCTGGAGCGAGAATCGAATCCTGAGTTTCATGGCAACTGGAAGAGCCAACTTAGCACTGCACTTTGGTTTACCTTCTCCTCCCTATTCTTTGCTCATAAGGAGAACTTGTCTAGCAACTTAAGCCGTGTTGTGATGGTATCTTGGCTGTTTCTAGTTCTGATCCTTAACTCGAGCTACACTGCAAGTCTTTCATCGATGCTCACAGTTCAACAACTGCAACCGAATGTCACAGACATCGAGTGGCTGAAGAAGAACAACATGAAGATTGGTTGTGATGGAGATTCTTTTGTTAGGACATACCTTGAGAGAGTAGAGAGGTTCAAGGTAGAAAACATCATAAATGTTAGCAGTGAATACAGCTATGTTGATGTATTCAAAAACGGCACCATAGCAGCTGCTTTTCTTGAACTCCCTTACGAAAAAGTATACATGAGTAAATACTGCAAGGGCTTCTCTGGCTCCACCCCTGCCATCAGATTTGGAGGACTTGGATTTATGTTCCAGAAAGGCTCCCCGGTGACCAGAGATGTTTCTAAAGCGATATTGCAGCTCTTAGAACAGGGAGAAATAAAGAGCTTAGAAGAGAAATGGCTGAGCCCCATGGGAGAGTGCGCTAGCAATGTCACCACAAACAACACAGAAAGTTTGAAGCTTGGGAGTTTCTGGATTCTGTATGTGATTTCTGGTGCAACTTCCACCATATGTTTCCTACTTTCTACCATGCATTCATCACCTTGGAAAAGAGCGGTTACATTAGCTAAGCAGATTTGTAAAAGCAAGAAACAAAGCGAAGAAAATGAGGCACGTGAGGATGTAACTGACACTGACAGTTCTGAGTTACAAGAAATCATAACGGTTTCTTCCTCTCCATCACACACACCAATGACAACTCCCGATCATGGAATCACGAATGCAAGATACAATACAACTAACCCTAATCTTCTCATCTAA 2742 0.4128 MNFHSNLSQAPARSCCLYFYLFISFLLQVEATANGDNKVISIGAIIDVNSRIGKEQLVAMDIAAQSYNNTSKTYKLALHFQNPTMNPLKATSIAEDMIKNQNVEVIVGMQTWTEAALVAELGSQAQVPVISLAAPTVSSPLMANRWPFLVRLDNKGTAYSKCIADIVYAYGWQRVVAIYEDDGYGGDNGMVGMLSEALQDVGSMIEYRLALPSPSYLPDPAEFLRNELLKLIENTQSRVFIVLQSSLDMVIHLFREASQMGLVDRESVWIIPESITNLLDSVNKSAISYMEGAIGIKNYYSENSTEYKDFEAQFRRTFHSKYTEEDNRNPGFYGLQAYDSIKIVAKAVDRIASHNSSSSSSGKTLLRGILSSKFLGLSGEIQFQELQLMQNPTLRIVNIGGRSYRELDFWSLEHGFTSRLGEGGNDTSRNTEGLSGVVIWPGKLSRVPKGWNLPTKENPMKIAVPGRTSFSKFVKVDYGENGKPNIYSGFCIEIFDKVLELLGYDLPYEYYPINGTYPDLVQLVYNKTYEAVVGDITLLADRMPYVDFTVPYAESGLSMVVPSKSDESAWMFMKPFTWQMWVVTAAILFYTMLVVWYLERESNPEFHGNWKSQLSTALWFTFSSLFFAHKENLSSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLQPNVTDIEWLKKNNMKIGCDGDSFVRTYLERVERFKVENIINVSSEYSYVDVFKNGTIAAAFLELPYEKVYMSKYCKGFSGSTPAIRFGGLGFMFQKGSPVTRDVSKAILQLLEQGEIKSLEEKWLSPMGECASNVTTNNTESLKLGSFWILYVISGATSTICFLLSTMHSSPWKRAVTLAKQICKSKKQSEENEAREDVTDTDSSELQEIITVSSSPSHTPMTTPDHGITNARYNTTNPNLLI* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4250 913 MobiDBLite consensus disorder prediction 857 876 - -
Amo13g4250 913 Gene3D - 470 568 - -
Amo13g4250 913 Gene3D - 161 329 - -
Amo13g4250 913 CDD GluR_Plant 458 795 - -
Amo13g4250 913 Gene3D - 569 708 - -
Amo13g4250 913 SUPERFAMILY Periplasmic binding protein-like I 37 451 IPR028082 -
Amo13g4250 913 Pfam Bacterial extracellular solute-binding proteins, family 3 485 796 IPR001638 -
Amo13g4250 913 CDD PBP1_GABAb_receptor_plant 41 420 IPR044440 -
Amo13g4250 913 MobiDBLite consensus disorder prediction 881 913 - -
Amo13g4250 913 PIRSF IGluLR_plant 11 910 IPR017103 -
Amo13g4250 913 PANTHER GLUTAMATE RECEPTOR 3.4 23 892 - -
Amo13g4250 913 Gene3D - 336 463 - -
Amo13g4250 913 Gene3D - 35 160 - -
Amo13g4250 913 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 892 - -
Amo13g4250 913 Pfam Ligand-gated ion channel 797 826 IPR001320 GO:0015276|GO:0016020
Amo13g4250 913 Gene3D - 723 802 - -
Amo13g4250 913 SMART GluR_14 461 797 IPR001320 GO:0015276|GO:0016020
Amo13g4250 913 SUPERFAMILY Periplasmic binding protein-like II 436 795 - -
Amo13g4250 913 MobiDBLite consensus disorder prediction 857 873 - -
Amo13g4250 913 Pfam Receptor family ligand binding region 58 399 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4250 Amo-Chr13 137441747 137445485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4250 18 835 Ion Channels AT2G29120 33.649 2.25e-149 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4250 - - aprc:113859865 1245.72