Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4248 ATGAATTTCCATTCAAATCTTTCTCAAGCACCTGCAAGAAGTTGTTGTCTCTACTTCTATTTATTCATCTCCTTTCTTCTCCAAGTTGAGGCTACTGCTAATGGAGACAACAAAGTCATATCTATAGGCGCAATCATCGATGTTAACTCGCGTATTGGGAAAGAACAGCTAGTAGCCATGGACATTGCAGCTCAAAGTTACAATAACACTTCAAAGACCTACAAACTGGCTCTTCATTTTCAGAACCCCACCATGAATCCCTTAAAAGCCACTTCCATTGCTGAAGATATGATTAAAAATCAGAACGTGGAAGTGATTGTGGGAATGCAAACATGGACAGAAGCAGCTTTGGTAGCTGAACTAGGAAGCCAGGCTCAAGTTCCTGTCATATCCTTCGCAGCACCTTCTGTTAGCTCACCATTGATGGCAAATCGATGGCCTTTTTTGGTGAGGCTAGATAACAAGGGCACTGCATATTCAAAATGCATAGCAGATATAGTTCATGCTTATGGCTGGCAAAGAGTAGTAGCCATTTATGAAGATGATGGCTACGGTGGAGATAATGGTATGGTAGGTATGCTATCTGAGGCACTCCAAGATGTAGGTTCAATGATTGAGTATCGCTTAGCACTTCCATCACCTTCTTATCTGCCTGATCCTGCTGAATTTCTTCGCAACGAGCTGCTAAAGCTAATTGAAAATACGCAATCTCGGGTGTTCATTGTTCTTCCATCATCATTAGATATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGTCTTGTGGATAGAGAATCAGTATGGATAATTCCAGAGAGTATAACTAATCTATTGGATTCTGTCAATAAGTCTGCTATTTCCTATATGGAAGGGGCTATAGGGATCAAGAACTACTACTCTGAAAATAGCACAGAGTATAAAGATTTTGAAGCTCAGTTCCGGAGAACATTTCACTCCAAGTATACCGAGGAAGATAACCGCAACCCAGGATTCTACGGTCTGCAAGCATATGACAGCATTAAAATTGTTGCACAAGCAGTGGACAGAATAGCCAGTCACAATAGTAGTAGCAGCAGTAGTGGGAAGACTTTACTAAGAGGAATATTGTCTAGCAAATTCCTTGGTTTAAGTGGAGAAATTCAATTTCAAGAATTGCAGCTCATGCAGAACCCTACCTTAAGGATTGTTAATATTGGTGGGAGGAGTTATAGGGAACTAGATTTTTGGAGTCTAGAACATGGATTTACCAGTAGATTAGGAGAAGGTGGAAATGATACTTCTAGGAACACAGAGGGTTTAAGTGGAGTGGTAATTTGGCCAGGGAAATTGTTGAGAGTTCCAAAAGGGTGGAATCTGCCTACTAAGGAAAATCCAATGAGAATTGCAGTGCCAGGAAGAACTTCATTTTCCAAGTTTGTCAAGGTCGATTATGGTGAGAATGGAAAGCCAAATAAATATAGTGGATTCTGCATTGAAATTTTTGATAAGGTGTTAGAACTATTGGATTATGATTTGCCATATGAGTACTATCCCATCAATGGAACCTATCCTGACCTGGTCCAACTTGTCTATAACAAGACTTATGAGGCTGTTGTTGGGGACATAACCTTACTAGCAGACAGAATGCCATTTGTAGATTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGGTAGTTCCATCAAAGTCAGATGAATCAGCATGGATGTTCCTGAAGCCTTTCACCTGGCAAATGTGGGTGGTAACTGCTGCTATCTTGTTCTACACAATGTTGGTAGTGTGGTACCTGGAGCGAGAATCAAATCCCGAGTTTCATGGCAACTGGAAGAGCCAACTTAGCACTGCACTTTGGTTTACCTTCTCCTCCCTATTCTTTGCTCATAAGGAGAACTTGTCTAGCAACTTAAGCCGTGTTGTGATGGTATCTTGGCTGTTTCTAGTTCTGATCCTTAACTCGAGCTACACTGCAAGTCTTTCATCGATGCTCACAGTTCAACAACTGCAACCGAATATCACAGACATCGAGTGGCTGAAGAAGAACAACATGAAGATTGGTTGCGATGGAGATTCTTTTGTTAGGACATACCTTGAGAGAGTAGAGAGGTTCAAGGTAGAAAACATCATAAATGTTAGCAGTGAATACAGCTATGTTGATGTATTCAAAAACGGCACCATAGCAGCTGCTTTTCTTGAACTCCCTTATGAAAAAGTATACATGAGTAAATACTGCAAGGGCTTCTCTGGCTCCACCCCTGCCATCAGATTTGGAGGACTTGGATTTATGTTCCAGAAAGGCTCCCCGGTGACCAAAGATGTTTCTAAAGCGATATTGCAGCTCTTAGAACAGGGAGAAATAAAGAGTTTAGAAGAGAAATGGCTGAGCCCGATGGGAGAGTGCGCTAGCAATGTCACCACAAGCAACACAGAAAGTTTGAAGCTTGGGAGTTTCTGGATTCTGTATGTGATTTCTGGTGCAACTTCCACCATATGTTTCCTACTTTCTACCCTGCATTCATCACCTTGGAAAAGAGCGGTTACATTAGCTAAGCAGATTTGTAAAAGCAAGAAACAAAGCGAAGAAAGTGAGGCACGTGAGGATGTAACTGACATTGACAGTTCTGAGTTACAAGAAATCATAACGGTTTCTTCCTCTCCATCACACACACCAATGACAACTCCCGATCATGGAATCACGAATGCAAGATACAACTAA 2718 0.4135 MNFHSNLSQAPARSCCLYFYLFISFLLQVEATANGDNKVISIGAIIDVNSRIGKEQLVAMDIAAQSYNNTSKTYKLALHFQNPTMNPLKATSIAEDMIKNQNVEVIVGMQTWTEAALVAELGSQAQVPVISFAAPSVSSPLMANRWPFLVRLDNKGTAYSKCIADIVHAYGWQRVVAIYEDDGYGGDNGMVGMLSEALQDVGSMIEYRLALPSPSYLPDPAEFLRNELLKLIENTQSRVFIVLPSSLDMVIHLFREASQMGLVDRESVWIIPESITNLLDSVNKSAISYMEGAIGIKNYYSENSTEYKDFEAQFRRTFHSKYTEEDNRNPGFYGLQAYDSIKIVAQAVDRIASHNSSSSSSGKTLLRGILSSKFLGLSGEIQFQELQLMQNPTLRIVNIGGRSYRELDFWSLEHGFTSRLGEGGNDTSRNTEGLSGVVIWPGKLLRVPKGWNLPTKENPMRIAVPGRTSFSKFVKVDYGENGKPNKYSGFCIEIFDKVLELLDYDLPYEYYPINGTYPDLVQLVYNKTYEAVVGDITLLADRMPFVDFTVPYAESGLSMVVPSKSDESAWMFLKPFTWQMWVVTAAILFYTMLVVWYLERESNPEFHGNWKSQLSTALWFTFSSLFFAHKENLSSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLQPNITDIEWLKKNNMKIGCDGDSFVRTYLERVERFKVENIINVSSEYSYVDVFKNGTIAAAFLELPYEKVYMSKYCKGFSGSTPAIRFGGLGFMFQKGSPVTKDVSKAILQLLEQGEIKSLEEKWLSPMGECASNVTTSNTESLKLGSFWILYVISGATSTICFLLSTLHSSPWKRAVTLAKQICKSKKQSEESEAREDVTDIDSSELQEIITVSSSPSHTPMTTPDHGITNARYN* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4248 905 SMART GluR_14 461 797 IPR001320 GO:0015276|GO:0016020
Amo13g4248 905 CDD GluR_Plant 458 795 - -
Amo13g4248 905 Pfam Receptor family ligand binding region 58 399 IPR001828 -
Amo13g4248 905 CDD PBP1_GABAb_receptor_plant 41 420 IPR044440 -
Amo13g4248 905 Pfam Ligand-gated ion channel 797 826 IPR001320 GO:0015276|GO:0016020
Amo13g4248 905 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 840 - -
Amo13g4248 905 SUPERFAMILY Periplasmic binding protein-like II 436 795 - -
Amo13g4248 905 Pfam Bacterial extracellular solute-binding proteins, family 3 484 796 IPR001638 -
Amo13g4248 905 MobiDBLite consensus disorder prediction 882 905 - -
Amo13g4248 905 Gene3D - 469 568 - -
Amo13g4248 905 Gene3D - 569 708 - -
Amo13g4248 905 Gene3D - 35 160 - -
Amo13g4248 905 Gene3D - 161 329 - -
Amo13g4248 905 PIRSF IGluLR_plant 11 902 IPR017103 -
Amo13g4248 905 PANTHER GLUTAMATE RECEPTOR 3.4 23 840 - -
Amo13g4248 905 Gene3D - 723 802 - -
Amo13g4248 905 SUPERFAMILY Periplasmic binding protein-like I 37 451 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4248 Amo-Chr13 137405022 137408777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4248 18 835 Ion Channels AT2G29120 33.964 1.01e-151 469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4248 13 137405022 137408777 Amo13g4248 13 137405022 137408777 ECH