Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4238 ATGGACACTAGCAGGGCTGAAGGGAAGAGAACCTTGCTGAGGTACAAAGAGGAGGAGGAGGAGGAGGACGACGAGGAGACTGAGGAGGAAGAGGAAGAAGACACGGGGGGTTATGGAGAAGAATATGGTGGTGGTGGGAGGAGGAAGAGGGCAATGACAGATCTCATGAGCAGCAAGAGAGGCTTCAAAGGTGGAGGAGGTTCGTCAATGCCACCGTCATGTCAGGTGGACGGCTGTGACTCTGATCTGAGCAAGGGAAAGCAGTATCATCGAAGACATAAGGTTTGTGAGAACCATGCCAAGGCTCCTTCCGTACACATTTCAGGACAACAACAAAGGTTTTGCCAACAATGCAGCAGGCTTAGAGGGAAAGAAGACCCTCTCTTTGTTGAATTTCATGAGCTTTCGGAGTTTGATGACTCAAAACGAAGCTGTAGGAGACGTTTGGCGGGGCATAATGAAAGGCGTCGCAAAAATGCAATTGAGTACCATGGAGAATGA 501 0.497 MDTSRAEGKRTLLRYKEEEEEEDDEETEEEEEEDTGGYGEEYGGGGRRKRAMTDLMSSKRGFKGGGGSSMPPSCQVDGCDSDLSKGKQYHRRHKVCENHAKAPSVHISGQQQRFCQQCSRLRGKEDPLFVEFHELSEFDDSKRSCRRRLAGHNERRRKNAIEYHGE* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4238 166 Coils Coil 12 35 - -
Amo13g4238 166 Pfam SBP domain 74 158 IPR004333 GO:0003677
Amo13g4238 166 ProSiteProfiles Zinc finger SBP-type profile. 71 159 IPR004333 GO:0003677
Amo13g4238 166 SUPERFAMILY SBT domain 72 163 IPR036893 GO:0003677|GO:0005634
Amo13g4238 166 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 18 159 - -
Amo13g4238 166 MobiDBLite consensus disorder prediction 1 17 - -
Amo13g4238 166 Gene3D - 64 146 IPR036893 GO:0003677|GO:0005634
Amo13g4238 166 MobiDBLite consensus disorder prediction 1 82 - -
Amo13g4238 166 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 159 IPR044817 GO:0003677
Amo13g4238 166 MobiDBLite consensus disorder prediction 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4238 Amo-Chr13 137211471 137213344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4238 65 162 SBP-box Gene Family AT2G33810 61.224 1.50e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo13g4238 SBP 3.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4238 - - aip:107631217 263.077