Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4230 GGGCCGGGTCTGGAAAAATCAAAAGAAATGACATGGTGCAATAGATCATCAGTTGTGGAGGGGGGAATCGAAATAATCAACCACCCCAATCTCAATATTATTGCAATCCCTAGAAATAGTAATGACAATAATAATAGTGTTATTAGTGTTAATCACGCAAATACTCCTCCTAAACCAACCGAAATCCGAGCCGTTACTTGCCCCTCTTGTGGTCATCACATTCAAATACAACAAGATCAGGGTGGGGGAATTCAAGACTTGCCAGGATTGCCAGCTGGAGTGAAATTTGATCCGAATGACCAAGAGATACTGGAGCATTTGGATGCAAAAGTGCAGTCTGATGTGAGAAAGCTTCATCCTCTAATTGATGAGTTCATACCAACTCTTGAGGGCGAGAATGGAATTTGCTATACTCACCCAGAGAAGCTTCCAGGAGTAAGCAAAGATGGACAAGTGCGTCACTTCTTTCACAGGCCTTCAAAAGCATACACAACGGGAACAAGGAAGAGAAGAAAGGTTCACACCGACCAAGAAGGAAGCGAGACTAGGTGGCACAAAACTGGCAAAACCAGACCCATCTCTGTGGCTGGTTCCGTTAAGGGTTTCAAGAAGATTCTTGTTCTCTACACCAACTATGGCAGGCAGAAGAAGCCCGAGAAGACCAACTGGGTCATGCATCAGTACCATCTCGGCTCCAACGAAGAAGAGAAAGACGGCGAACTCGTCGTTTCTAAGGTTTTCTATCAAACACAACCTCGACAGTGTGCAAACAAGGATCCTTATGATGAAAGATTATTGATGACTTCACAAATTAACAGTGTCAATGACATTAGCATTCACGCACTACCCAAGAACAACAACAACAACAATGCAGGTTTTGTGGATTATTATAACCCCGGTTTCATGAATATGAATTATGAACAGATGAACGAGACTACCTCACCGCAACTGATTCCGAATATGGTGGTGCAAGGTGACAGCTCTTCTTTCATTCGGTTACCCAGGTTGGACAGAAAGTAG 1020 0.4363 GPGLEKSKEMTWCNRSSVVEGGIEIINHPNLNIIAIPRNSNDNNNSVISVNHANTPPKPTEIRAVTCPSCGHHIQIQQDQGGGIQDLPGLPAGVKFDPNDQEILEHLDAKVQSDVRKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVHTDQEGSETRWHKTGKTRPISVAGSVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCANKDPYDERLLMTSQINSVNDISIHALPKNNNNNNAGFVDYYNPGFMNMNYEQMNETTSPQLIPNMVVQGDSSSFIRLPRLDRK* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4230 339 ProSiteProfiles NAC domain profile. 90 249 IPR003441 GO:0003677|GO:0006355
Amo13g4230 339 MobiDBLite consensus disorder prediction 165 190 - -
Amo13g4230 339 MobiDBLite consensus disorder prediction 169 188 - -
Amo13g4230 339 Pfam No apical meristem (NAM) protein 91 230 IPR003441 GO:0003677|GO:0006355
Amo13g4230 339 Gene3D NAC domain 99 253 IPR036093 GO:0003677|GO:0006355
Amo13g4230 339 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 10 329 - -
Amo13g4230 339 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 329 IPR044799 GO:0003700
Amo13g4230 339 SUPERFAMILY NAC domain 85 249 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4230 Amo-Chr13 136994730 136998188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4230 10 333 NAC Transcription Factor Family AT1G28470 57.704 4.14e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g4230 NAM 5.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4230 - - adu:107480763 623.239