Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4222 ATGGAGGGGGAGGGTGGTTCAGAGGGAGAGAATAATCAGAGAAGGGGTGGCACAGATGATAATAGCAATGAAAATATCAATGGAAGCAATAGCAAAGTTGCGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACACCCTATCAACTCGAAACCCTCGAGAAAGCTTATGCCTTGGAGACGTACCCTTCTGAGGCTATGAGGGCCGAGCTATCGGAGAAATTGGCGTTGTCTGATCGGCAGCTGCAGATGTGGTTCTGCCACCGGAGGCTGAAAGACAAGAAAGACTTGCCAACCAAGAAGCCGCCGAAGAAGGCCGTGGAGAAAGTGCGGGAGCCAGAGCCTGAACCAGTGCCGGATTCCCCAGTGGATGACCACAGATTGGGCCCCGAGCTAGGCAATGAGAATGGATCCGGGTCTGGTTCTGGGTCAAGCCCGTTTACCCGGTCAGAGTCCAGGAGTGTGGCGCCGCGGGGTTATTATGAATCACAGCAGGCTGCGCTCGAGCTCAGAGCAATTTCTTGTGTGGAGGCACAGTTAGGGGGGCCATTGAGGGAAGATGGACCCATTCTAGGAATAGAGTTTGATGCATTGCCACCAGATGCATTTGGGGCGCCCTTAGAACAGCAGAAGCGACCAAGTCATGCCTATGACAGTAAAGTTTATGAAAGACATAATGCTAGACCAAATAAGGCTATGGCAAGGGCATTCCATGAATATCAATTTCTACGGAACCAGGCTGGCCCCAGGTCTGATGGTTTTGGACAATATCCCCAACATCATTTACATGATCCGATGGAAGGTCCTGCAAGAAATACCCATTTTGCACATGGAACTGAACAGTTACATAGAAGTCATGCTACCCAAGGTCATTCTTCTCGAGTCCGTATTTTACCTCAACAAGATAAGCAAGGGATTCCTCATCCATCTCCTCCTCAAGATGATGATGTTGCTTCCCAAAAGCAATTGCACACAAATGTAGTGAACACTGGAGTGAACTCTCATTCTACTGATTACCAAATTGTTGGGCCCGAAAATCCCTATAACCCACCAGGTGGACAAGTTTCCCATATCACTACAATGCAGATTGAGAAAAAACGAAAGAGTGATGATGCTAGAAGTGCAAGGGAAGTTGAAGCCCATGAGATGAGGATCAAGAAAGAGCTTGAGAAACAAGATAACCTTAGACGAAAGAATGAAGAGCGAATGAGGAAAGAAATGGAGAGACAAGATCGTGAAAGAAGGAAGGAAGAAGAAAGGTTGATGCGTGAGAGACAGCGAGAAGAGGAAAGATTAAGGCGTGAGCAAAAACGTGAACTCGAACGAAGGGAAAAGTTTTTGCTGAAAGAAAATTTGAAAGCTGAGAAAATGAGGCAAAAGGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGACGCAAAGCTGCCTTGGAAAAGGCAACTGCTCGTAGAATAGCTAAGGAATCCATGGAACTAATTGAAGATGAACAACTGGAATTGATGGAGCTTGCTGCTTCAAGCAAGGGATTGTCCTCTATAATTCATCTTGATTTTGATACTCTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTTTTCCCACCTAAGAGTGTAAAGCTAAGAAAACCATTTGCGATCCAACCCTGGATTAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAAATTTTTGATTACTTTTGCTGATATTCTTGAGTTGTGGCCTTTTACTCTCGATGAGTTTGTGCAAGCTTTTCATGATTACGATTCAAGACTGTTGGGTGAAATACATGTTGCTCTCCTTAAGGTGATAATAAAAGACATTGCAGATGTTGCAAGGACACCTTCCACTGGATTAGGAATGAGCCAAAATGGTGCAGCTAATTCAGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGTAATTGGCATAAGCACTTAAATCAGTTGACATGGCCAGAAATTTTTCGACAGCTAGCATTAGCAGCAGGTTATGGACCACAGTTGAAGAAAAGAAATATTACATGGTCATATGCAAATGATAAAGATGAGGGCAGGAGTTGTGAAGATATCATTTCTACACTTAGAAATGGTTCAGCAGCTGAACATGCTGTGGCAAAAATGCGGGAGAGAGGTCTACTAGCACCTCGAAAATCAAGGCACCGCTTAACTCCTGGAACAGTAAAGTTTGCTGCATTTCATGTTCTCTCACTTGAAGGTGGTGAAGGATTGACAGTACTAGAACTTGCAGAAAAAATTCAGAAATCTGGCCTTCGGGACCTGACAACTAGCAAGACACCAGAGGCATCGATTTCTGTCGCTTTGACAAGAGATGCTAAGCTTTTTGAGAGAATAGCTCCATCGACATATCGCGTACGTACTGCATTTAGAAAGGATCCGGCGGATGCTGAGTCTATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGACGCTGATGAGGTTGAACGAGAAGACGATATTGAAAGAGATGATGTTGAAAGATATGATGATGTAGAAAGAGAAGAAGAGTCAGAAAGTGAAGAAGTTGATGATGATCCTGAAGTTGACGATTTGCTAGGTCCTTCAAGTGCTAACAAAACATCTGAACTGTGTGATGATTTCTCATCTATTGGAAAAGAAAGTTTGGGTCATAAGGTAGAACTTATTCAAGATCAGTTTGAGAAGGATCTTCCGGAGAATGGTACTAAGGATGTGGATGGTTCTAAAGATGCTCATCTTCCAGATGCTATCACTGGACAACCCGTTATTACAAACTTTGAGGAAGATAATATGGAAATTGATGAAAGCAAGACTGGAGAGTCATGGGTTGAAGGGCTTGCAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAACGTTTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGCGTTGTTCTCGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCTCAGATAGATAAAATTCGACTGAGAGATGATAATGTAAATAAATCAGATTTTCCATCTATCAATGGGAATAAAGTTGAACCACAATACACAAGTCCTGCTGTGGGGGGGAACCAAAGCCCATTGCTTGACATAAACATTGACAATAATAATAATAATGAGGCATCGCCTAGCACTGCAGAAAATAAAAAAGCTGCAGTTGTACAGAACCTTGCCATGGAAAAGCCCTCAATAGGTCAAGATTACTGCATTGGTCCAGATAACCCTCAAACTCAACTATCTGCTCCCTATTCGAAAAGGTCTCGTTCTCAGTTGAAATCATATATTTCTCACATGGCAGAAGAGATGTCCGTATACAGGTCTTTACCCCTTGGTCAAGATCGCAGACATAATCGTTATTGGCAATTCGTTGCATCTGCTTCTTGCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATATCTTGATGGCAATTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCTCTTTTTAATTCACTGGATTTGCGTGGGATCAGGGAATCTCATTTGCGCATAATGTTGCAAAAGATTGGAAGTTCCTTCAAAGAAAATGTTAGGAAGAATGCACAATCTGCCAATATTGGAAGCAGAGATGAAAGTAATATTAAAAATGAAGCTGATGAAGCAGAGTCCAGTCCTGATTGCCATGCATTGTCTGACAGTCCCAGCAGTACACTCTGTGGCTTGAACTCTGATACATCTGAAACTTCTTCATCATTCAAAATTGAGCTTGGGAAAAGTGAGAGTGAGAAGAAAGGTGCCTTGAGAAGGTATCAAGATTTCCAGAAATGGATGTGGAAAGAATGCTATAACTCATCCATATTATCTGCAATGAAATATGGGAAAATGAGATGCAAACCTCAGGTGGACATCTGTGATATCTGCCTCAACCCTTATTTCTTTGAAGACTCCCATTGCAATTGTTGCCATCGTACTTTTCCCTCAAATAACGGATTTAATTTTTCAAAACATATATTTCAATGTGGGGGCAAATTGTCCAAAGATATTTGTATTCTGGATTGTTCTCTTCCCTTGAGGACAAGGTTGCTTAAGGCCCTGCTGGCTTTTATTGAGGCATCTGTTCCCTCCGAAGCGTTTCAATCAACTTGGACAGAAGATACTAGAAGGCATTGGGGTTTGAAGTTAAGCAAATCATCTTCTGTCGAGGAACTTCTTCAGTTATTGACTGTRTTTGAGAGAGCAATAAAGCGAGATTTTTTATYGTCATCCTTCTCAACAACACAAGAATTGTTGGGATCAAGCAGTATGTCAGAGAGTGCTTTTACCGATCCTGAATCTGTTGCTGTACTTCCATGGGTTCCACAGACCACCTCAGCTGTGTCTCTCAGACTCTCTGAGTTTGATGCGTCCATTAGCTATGTTCAGCTTGAAAAATCTGAGCATCGCAGGGAGAAAGAAACTATAGAATACATGAAGCTTCCTTCAAGATCTAATCCTTTCAAATCTAGTAGAGTAGTGGAACCAGCAGACTTGGACCATGATGAATTCATGAAAGTTAGGTCTGCTCCCATGAAAATTGTAAAAAGTGGCAATAAACGTGGGCGGGGGAATAGTGATAAAGGACGGGGTAAAAAGATAGCTAAAAGAATGCATGATTCCAAACAAGATACTGGCCGCCGCATTGTTAAGGTCACAGAGAATCTTAGTCAAAGACTAAAACAGCAGGGGCAAGGAGCACAAGGACAAAGTGGTGGACGTGGTCGCCGAACTGTCAGGAAAAGACGAGTGGAAAAGAGGGCTGTTGAAGATTTGCTGCTGGGCCACAAGGCTGGCACACACAGTTCCAATATTGTTAGAGAACCATTGAGAAACCTGGATGAGGAATGGGATGATGATGAAAAGGCAAGTCCCATGACTTCCATCCACATGGGGGCTGCCGACAATAGTAACAGTGCCGAAGAGGCAGATTCTGATGACAATGCTCAAGTAGCAGAGTCCAACGACAATGCTCAAGCAGCAGATTCGGATGACAATGCTCAAGAAGTGGATTCCGATGACAATCCTCTAGAAGTGGACTCAGATGACAATGCTCAAGCAGTGGACTCAGATGACAATGGCCAAGCAGTGGAATATGATCAAGGAAACTGGGGAATAGGTTTCAATAACACCCCCAACAGGTGGAGTAGGGATGTGGTTGGAATGATTGATGAAGATGTAGAAGCTTCAGACGAGGACAATGACAACAATGTTGGGCTTGAAGAGAACGAAGAGGAAGAATCAGAGGGTGATGATGTTATGAGTGAGGAGGGTTCAGATGGAATTGCAGATAGAGTTTTGAATGATGACTCGGACTCTGATGATTCTGAAGATTCATCTGATTAG 5442 0.4316 MEGEGGSEGENNQRRGGTDDNSNENINGSNSKVANSNEGQSKPKRQMKTPYQLETLEKAYALETYPSEAMRAELSEKLALSDRQLQMWFCHRRLKDKKDLPTKKPPKKAVEKVREPEPEPVPDSPVDDHRLGPELGNENGSGSGSGSSPFTRSESRSVAPRGYYESQQAALELRAISCVEAQLGGPLREDGPILGIEFDALPPDAFGAPLEQQKRPSHAYDSKVYERHNARPNKAMARAFHEYQFLRNQAGPRSDGFGQYPQHHLHDPMEGPARNTHFAHGTEQLHRSHATQGHSSRVRILPQQDKQGIPHPSPPQDDDVASQKQLHTNVVNTGVNSHSTDYQIVGPENPYNPPGGQVSHITTMQIEKKRKSDDARSAREVEAHEMRIKKELEKQDNLRRKNEERMRKEMERQDRERRKEEERLMRERQREEERLRREQKRELERREKFLLKENLKAEKMRQKEELRKEKEAERRKAALEKATARRIAKESMELIEDEQLELMELAASSKGLSSIIHLDFDTLQNLESFRDSLCVFPPKSVKLRKPFAIQPWINSEENVGNLLMVWKFLITFADILELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIADVARTPSTGLGMSQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALAAGYGPQLKKRNITWSYANDKDEGRSCEDIISTLRNGSAAEHAVAKMRERGLLAPRKSRHRLTPGTVKFAAFHVLSLEGGEGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRTAFRKDPADAESILSEARKKIQIFENGFLAGEDADEVEREDDIERDDVERYDDVEREEESESEEVDDDPEVDDLLGPSSANKTSELCDDFSSIGKESLGHKVELIQDQFEKDLPENGTKDVDGSKDAHLPDAITGQPVITNFEEDNMEIDESKTGESWVEGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKIRLRDDNVNKSDFPSINGNKVEPQYTSPAVGGNQSPLLDINIDNNNNNEASPSTAENKKAAVVQNLAMEKPSIGQDYCIGPDNPQTQLSAPYSKRSRSQLKSYISHMAEEMSVYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYLDGNWRLIDSEEAFDALFNSLDLRGIRESHLRIMLQKIGSSFKENVRKNAQSANIGSRDESNIKNEADEAESSPDCHALSDSPSSTLCGLNSDTSETSSSFKIELGKSESEKKGALRRYQDFQKWMWKECYNSSILSAMKYGKMRCKPQVDICDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHIFQCGGKLSKDICILDCSLPLRTRLLKALLAFIEASVPSEAFQSTWTEDTRRHWGLKLSKSSSVEELLQLLTVFERAIKRDFLXSSFSTTQELLGSSSMSESAFTDPESVAVLPWVPQTTSAVSLRLSEFDASISYVQLEKSEHRREKETIEYMKLPSRSNPFKSSRVVEPADLDHDEFMKVRSAPMKIVKSGNKRGRGNSDKGRGKKIAKRMHDSKQDTGRRIVKVTENLSQRLKQQGQGAQGQSGGRGRRTVRKRRVEKRAVEDLLLGHKAGTHSSNIVREPLRNLDEEWDDDEKASPMTSIHMGAADNSNSAEEADSDDNAQVAESNDNAQAADSDDNAQEVDSDDNPLEVDSDDNAQAVDSDDNGQAVEYDQGNWGIGFNNTPNRWSRDVVGMIDEDVEASDEDNDNNVGLEENEEEESEGDDVMSEEGSDGIADRVLNDDSDSDDSEDSSD* 1814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1582 1604 - -
Amo13g4222 1813 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1138 1210 IPR028941 -
Amo13g4222 1813 CDD homeodomain 44 98 IPR001356 GO:0003677
Amo13g4222 1813 MobiDBLite consensus disorder prediction 837 893 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 94 161 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1552 1581 - -
Amo13g4222 1813 PANTHER HOMEOBOX DOMAIN PROTEIN 12 854 - -
Amo13g4222 1813 PANTHER HOMEOBOX DOMAIN PROTEIN 856 1684 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 18 48 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1037 1077 - -
Amo13g4222 1813 PANTHER HOMEOBOX DOMAIN PROTEIN 1692 1813 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1233 1247 - -
Amo13g4222 1813 Pfam DDT domain 557 612 IPR018501 -
Amo13g4222 1813 Pfam Homeodomain 42 98 IPR001356 GO:0003677
Amo13g4222 1813 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 12 854 IPR044977 GO:0006357
Amo13g4222 1813 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 856 1684 IPR044977 GO:0006357
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1640 1657 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 250 359 - -
Amo13g4222 1813 Coils Coil 381 483 - -
Amo13g4222 1813 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 959 1002 IPR028942 -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1682 1697 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 138 155 - -
Amo13g4222 1813 Pfam HB1, ASXL, restriction endonuclease HTH domain 738 806 IPR007759 GO:0006355
Amo13g4222 1813 ProSiteProfiles HARE-type HTH domain profile. 738 807 IPR007759 GO:0006355
Amo13g4222 1813 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Amo13g4222 1813 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1692 1813 IPR044977 GO:0006357
Amo13g4222 1813 SMART HOX_1 41 103 IPR001356 GO:0003677
Amo13g4222 1813 Gene3D - 26 100 - -
Amo13g4222 1813 SMART testlast3 556 615 IPR018501 -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1635 1813 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1225 1265 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1698 1719 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 318 346 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1548 1616 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1249 1265 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 94 134 - -
Amo13g4222 1813 SUPERFAMILY Homeodomain-like 29 98 IPR009057 -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 285 302 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 839 878 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1757 1789 - -
Amo13g4222 1813 MobiDBLite consensus disorder prediction 1 54 - -
Amo13g4222 1813 ProSiteProfiles DDT domain profile. 556 615 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4222 Amo-Chr13 136878365 136887686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4222 4 1745 Homeobox Transcription Factor Family AT1G28420 47.944 0.0 1357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo13g4222 WSD 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4222 - - ahf:112733536 3139.75