Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4214 ATGATTTGGTGGGAAGCAGGGGATTTTGTTTCTTCATATTCAGAGAGAAAGTCTGGGTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGATCATCAAGTAGAGGAAGGAGTGATAGTAGTGGTCGTCATCTACAGCAGCCTGCAGAGGAAAACATGGTTTGGCGAGCACCTTCTAGATCATTGGATGACCGTGCTAGATCCCGGAAGGATGAAGAGGATTTGAACCGAGCAATTGCACTTTCTTTAGGTGAAAATTTCAAGAGACCAAATGGTAGCCCCTTTTCCCCACTTGCTCAACAAGGTTATAGATGGCACACAGGCAGTGATGATATTGATGATTACTCAAAGGCCCTTCAGGATCGCATGCACTCATCTGCACATCCTCCATATACACCTGCACCTTTATATCCCAGAGGATATAGTTTGGCAAATGTAAGAATATGTGGAGGGTGCAATCAGGAGATACTATATGGAAATTGTTTGGGATGGATGGATACTTATTTTCATCCAGATTGCTTCCGTTGTCACTCTTGTCGCCACCCTATTACTGAACGTGAGTTTTCTTTGTCAGGGAGCCGTCCATATCACAAGACTTGTTTTAAAGAGTTAACACACCCTAAATGTGAAGTTTGCCATCAATATATTCCAATAAATGCAGCTGGTTTGATTGAGTATAGGTGCCATCCCTATTGGTACCAAAAGTATTGTCCATCACATGAGTATGATAATACAGCTCGCTGTTGTAGTTGTGAAAGATTAGAGTCGCGGAACGAAAAGTATTATAGACTGGACGATGGACGGATTTTGTGCTTCGAGTGCATGGAATCTGCTATAACGGATACTGGTGAATGCCAGCCTCTATACCATGCCATCAGAGATTATTATGAAGGGATGAACATGAGAATAGATCAGCAAGTTCCTATGCTTCTTGTGGGTAGAGATGCACTTAATGAAGCCATTGTTGGGGAGAAGAATGGTTTCCATCATTTGCCTGAAACAAGGGGTTTGTGCCTCTCAGAAGAGCAAACTGTCACCAGTGTACATAGATGGCCAAGAATGGGAGGGCATAGATTCATAGGAATGAGAACTCAACATCAAAAGCTGACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTTTATGGTCTTCCAAGGTTACTCACAGGTGCTATCCTAGCCCATGAGTTGATGCATGCTTGGTTGAGACTTAAAGGTTACCGGAACCTTGATGCGGAAGTAGAGGAAGGTATTTGTCAGGTTCTATCATACATGTGGCTTGAATCAGAAGTGATGCCAGGGTCTAGTAGATACATGCCATCAACATCATCAGCATCTTCATCTTCTTCCTACTCCACATCATCATCATCATCAAAGAAAGGAGCAAGGTCTCAAGTTGAGAACAAGTTAGGAGAGTTTTTCATGAACCAGATAGCCAATGATTCGTCACCAGCATATGGAGGTGGGTTTAGGTCTGCAATTGAAGCAGTTAATAAGTATGGTTTGCGTTGTACCTTGGATCATATTCGTTTGACTGGTCATTTCCCACTGTAA 1554 0.4208 MIWWEAGDFVSSYSERKSGFMKWFGKIFKIGSSSRGRSDSSGRHLQQPAEENMVWRAPSRSLDDRARSRKDEEDLNRAIALSLGENFKRPNGSPFSPLAQQGYRWHTGSDDIDDYSKALQDRMHSSAHPPYTPAPLYPRGYSLANVRICGGCNQEILYGNCLGWMDTYFHPDCFRCHSCRHPITEREFSLSGSRPYHKTCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWYQKYCPSHEYDNTARCCSCERLESRNEKYYRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQVPMLLVGRDALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWPRMGGHRFIGMRTQHQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLDAEVEEGICQVLSYMWLESEVMPGSSRYMPSTSSASSSSSYSTSSSSSKKGARSQVENKLGEFFMNQIANDSSPAYGGGFRSAIEAVNKYGLRCTLDHIRLTGHFPL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4214 517 SMART lim_4 148 200 IPR001781 -
Amo13g4214 517 CDD LIM_DA1 149 201 - -
Amo13g4214 517 MobiDBLite consensus disorder prediction 33 47 - -
Amo13g4214 517 MobiDBLite consensus disorder prediction 437 462 - -
Amo13g4214 517 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 13 517 - -
Amo13g4214 517 MobiDBLite consensus disorder prediction 57 71 - -
Amo13g4214 517 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 143 174 - -
Amo13g4214 517 Pfam LIM domain 149 202 IPR001781 -
Amo13g4214 517 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 232 - -
Amo13g4214 517 ProSitePatterns LIM zinc-binding domain signature. 149 183 IPR001781 -
Amo13g4214 517 Pfam Protein DA1 298 512 IPR022087 -
Amo13g4214 517 ProSiteProfiles LIM domain profile. 147 207 IPR001781 -
Amo13g4214 517 PANTHER PROTEIN DA1-RELATED 2 13 517 IPR045218 -
Amo13g4214 517 MobiDBLite consensus disorder prediction 33 71 - -
Amo13g4214 517 Gene3D Cysteine Rich Protein 139 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4214 Amo-Chr13 136594252 136596651 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo13g4214 DA1-like 1.2e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4214 - - gmx:100798829 855.514