Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4208 ATGAAGGCGCTGATTCTGGTTGGTGGGTTTGGAACAAGGTTGAGGCCATTGACACTCAGTGTTCCCAAGCCTCTTGTTGATTTTGCTAACAAACCCATGATTCTGCATCAGATTGAAGCCCTTAAGGCTGTTGGAGTCAGTGAAGTGGTACTAGCTATCAATTACCAACCGGAGGTAATGTTGAATTTCCTGAAGGATTTTGAAGCAAAGCTCGACATCAAAATCACTTGTTCTCAAGAAGCTGAACCAATGGGGACAGCAGGTCCCTTGGCTCTTGCCAGAGATAAGTTGATAGATGAATCGGGAGATCCGTTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTACCCACTTAAAGAAATGATCAAATTCCACAAAGCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTTGATGAACCATCCAAATATGGTGTGGTTGTGATGGAGGACACCACCGGGCAGGTTGAGAAATTTGTAGAGAAACCAAAGTTGTTTGTTGGTAATAAAATCAATGCCGGAATCTACCTATTGAACCCCTCAGTTTTAAATCGGATTGAACTGAGGCCCACTTCAATTGAGAAACAGGTGTTTCCAAAGATAGCGGAAGAGAAAAAGCTCTATGCAATGGTTCTGCCCGGATTCTGGATGGACATTGGAATGCCAAAGGACTACATTACCGGCCTGAGACTCTATTTGGATTCATTGAGGAAAAAGACTCCTTCTAAGTTGGCCGCTGGTCCCAACATTGTGGGGAATGTCATTGTGGATGAAACTGCCAAAATCGGCGAGGGGTGCCTCATTGGACCTGATGTTGCCATTGGCCCTGGCTGCATTATTGAGTCAGGTGTCAGGCTCTCAAACTGCACAATAATGCGAGGAGTTCGTGTAAGAAATCATGCTTGCATATCAAGCAGCATCGTTGGTTGGCATTGCACTATCGGGCAATGGGCTCGTTTGGAGAACATGACTGTCCTTGGAGAAGATGTCCATGTATGCGATGAAATTTACACCAATGGTTGCCTTATTTTGCCCCACAAGGAGATCAAGTCAAGCCTTGTGACACCAGAGATAGTCATGTGA 1086 0.4503 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVSEVVLAINYQPEVMLNFLKDFEAKLDIKITCSQEAEPMGTAGPLALARDKLIDESGDPFFVLNSDVISEYPLKEMIKFHKAHGGEASIMVTKVDEPSKYGVVVMEDTTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLNRIELRPTSIEKQVFPKIAEEKKLYAMVLPGFWMDIGMPKDYITGLRLYLDSLRKKTPSKLAAGPNIVGNVIVDETAKIGEGCLIGPDVAIGPGCIIESGVRLSNCTIMRGVRVRNHACISSSIVGWHCTIGQWARLENMTVLGEDVHVCDEIYTNGCLILPHKEIKSSLVTPEIVM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4208 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058|GO:0016779
Amo13g4208 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 291 IPR001451 -
Amo13g4208 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 233 IPR029044 -
Amo13g4208 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
Amo13g4208 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 313 IPR029044 -
Amo13g4208 361 Gene3D Hexapeptide repeat proteins 237 359 - -
Amo13g4208 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
Amo13g4208 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4208 Amo-Chr13 136534674 136538245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4208 1 147 Eukaryotic Initiation Factors Gene Family AT4G18300 23.871 7.26e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4208 K00966 - csin:114268393 659.833