Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4205 ATGGAGTCGTCGTGGTCGTGGTCGCGCTCGATCACCGAGACTGTGAACGGGTCCCACCAATTCACCATCAAGGGTTACTCCTTGGCGAAAGGGATGGGTCCGGGCAGGCACATTATGAGCGGCACCTTCAACGTCGGTGGTTATGATTGGGCCATTTACTTCTACCCTGATGGCAAGAACCCTGACGACAATTCCACCTACGTTTCGGTCTTCATTGCACTGGCCAGCGAGGGAACCGATGTCAGGGCGTTGTTCAAGCTCACGCTGCTCGATCAGACCCAGAACGGCAACCATAAAGTCCACAGTCATTTCGATCGCCCACTAGAGAGGGGCCCTTACACCATCAAGTACAGAGGCAGCATGTGGGGTTACAAGCGATTCTTTAAAAGAGCGTTACTGGAAACATCAGAATATCTGAAAGACGATTGCCTTATCATGCAATGCACTGTAGGTGTTGTGAAAACCCGTCTTGAGGGTTTTAAACCGGGGCTCATTGTGCCAGATTCAGACATGGGCCGAGACTTTAAGGACTTGTTGGAATCCGAAATTGGTTTTGACATAGTTTTCAAGGTCAAGAGTGAAAGCTTCAAAGCTCATAAGTTGATACTTGCTGCCCGATCTCCTGTCTTCAGAGAGCAGTTTTCTGGAGGAGTTGGGGATCCTAGCATAGATGAAATAGTGGTTGATGATATTGAGCCTTTTGTCTTCAAGGCAATGCTTCTCTTCATTTACACAGACAAACTTCCTGAGATGTCCGATATTATGGGCTCAATAAATATGTGCTCGTGTACTGTCATGGTGCAGAATCTGTTAGCTGCTGCTGATCTCTATAATCTTGATCGTCTAAAACTACTGTGTGAATCAAAATTGAGTGAAAAAATCAACACTGACACTGTTGCCACAACACTTGCCCTGGCTGAGAAACATCATTGTCCGCAGCTTAAGGCGATCTGTTTAAAATTTATTGCAAATCCAGTAAACATAGGAGTGGTAATGCTGTCGGAAGCTTTTGAACATTTGAAAGAAGGTTACCCTAAGATGCTGTCGGAATTGCTCAAGACATTTGCAGCAGGAGATGATAATTCAAGCCAGCCATCAAGCAGGAAAAGAAGTGGCAGCAGAATACACCGGCAAGATTTTGTGGATGGTGCTCCTGCTGAATCTGTTAATCCAAATGGCAGGTCTCTCAGGAGGCGTACATGGTGA 1206 0.4635 MESSWSWSRSITETVNGSHQFTIKGYSLAKGMGPGRHIMSGTFNVGGYDWAIYFYPDGKNPDDNSTYVSVFIALASEGTDVRALFKLTLLDQTQNGNHKVHSHFDRPLERGPYTIKYRGSMWGYKRFFKRALLETSEYLKDDCLIMQCTVGVVKTRLEGFKPGLIVPDSDMGRDFKDLLESEIGFDIVFKVKSESFKAHKLILAARSPVFREQFSGGVGDPSIDEIVVDDIEPFVFKAMLLFIYTDKLPEMSDIMGSINMCSCTVMVQNLLAAADLYNLDRLKLLCESKLSEKINTDTVATTLALAEKHHCPQLKAICLKFIANPVNIGVVMLSEAFEHLKEGYPKMLSELLKTFAAGDDNSSQPSSRKRSGSRIHRQDFVDGAPAESVNPNGRSLRRRTW* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4205 401 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 5 365 IPR045005 GO:0016567
Amo13g4205 401 Gene3D Potassium Channel Kv1.1; Chain A 163 289 IPR011333 -
Amo13g4205 401 Gene3D - 293 372 - -
Amo13g4205 401 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 15 155 IPR008974 GO:0005515
Amo13g4205 401 SUPERFAMILY TRAF domain-like 13 152 - -
Amo13g4205 401 SMART math_3 21 133 IPR002083 GO:0005515
Amo13g4205 401 MobiDBLite consensus disorder prediction 357 401 - -
Amo13g4205 401 SUPERFAMILY POZ domain 168 292 IPR011333 -
Amo13g4205 401 SMART BTB_4 185 294 IPR000210 GO:0005515
Amo13g4205 401 Pfam BTB/POZ domain 175 293 IPR000210 GO:0005515
Amo13g4205 401 ProSiteProfiles BTB domain profile. 185 252 IPR000210 GO:0005515
Amo13g4205 401 CDD MATH 17 150 IPR002083 GO:0005515
Amo13g4205 401 CDD BTB_POZ_BPM_plant 171 291 - -
Amo13g4205 401 ProSiteProfiles MATH/TRAF domain profile. 16 150 IPR002083 GO:0005515
Amo13g4205 401 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 5 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4205 Amo-Chr13 136504422 136506764 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo13g4205 BTB 3.5e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4205 K10523 - gmx:100778300 627.861