Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4182 ATGTCTTCAGGGACATCATCGTATTGGTGCTACAGGTGCAGTCGATTTGTCAGGGTATGGAGGCACGACACTGTGGCTTGTCCCGACTGCGACGGCGGTTTCGTTGAGGAGATCGAGCCTCCGCCACGCTCCGTCAACCTCGACGCCCGCCGCCGCAGATTTCCTGCAGCAGCCATGTACATGATTGGCCAGCGCCCCAACTCCTCCTCTGACCAAAACAATAACGTCATCGACCACAATAACAACTCTGCCATCAACCGCCACGCCCTCCGCCGGACCCGCCGCAACGGCGGCGACCGCTCCCCTTTCAACCCCGTCATCGTCCTCCGTGGTAGCGGCGGATCCTCCGAGTCTCAGGAAAACAGCAACGGCGGCGGAGGGGAGGGACGCGGGTTCGAGCTCTTCTATGACGACGGCGGCGGCTCGGGCCTGAGACCCTTGCCGGCAAGCATGTCAGAGTTTCTGCTGGGATCCGGGTTCGATCGTCTTCTAGAACAGCTGTCTCAGATCGAGATCAACGGTATTGGGCGTTACGAGCACCCTCCGGCTTCAAAAGCCGCCATTGATTCCTTACCGACAATCGAAATCGATGAGAACCACTTGGATTTGGAATCTCACTGTGCAGTTTGTAAAGAGGCTTTCGAGATGGGAACTTCAGTGAGGGAGATGCCATGTAAGCATATATACCACCAAGACTGTATATTGCCGTGGCTCACACTCCACAATTCCTGCCCTGTTTGCCGCCACGAGTTGCCATCCGATAACCCCAGCAACAGCAGCGGTTCGCCGTCATCGTCGGGGCACTCGGTTGCGTTGACCGAGGATGAGAATGTTGGGTTGACCATTTGGAGGCTCCCCGGTGGAGGATTTGCTGTTGGGAGATTCTCTGGTGGGAGGAGAGGTGCTGAGAGGGAGCTTCCTGTCGTGTATACTGAGATGGATGGTGGCTTTAACAATGGTGGTGAGCCCAGGAGGATTTCTTGGTCTTCTAGAGGAACTCGAGGGCGGCAGAGTGGTGCCTTTCAGAGGTTTTTTACGAGTTTGTTTGGTTGCTTCAGTGGTAGGGGGAGCTCATCGCGTTCTCGAACCGTGGATCACTCTCCACACTCGAGAAGGACATGGTCTATGGATGTAAACAGTGGAATGAGGTCATGGTGA 1158 0.5596 MSSGTSSYWCYRCSRFVRVWRHDTVACPDCDGGFVEEIEPPPRSVNLDARRRRFPAAAMYMIGQRPNSSSDQNNNVIDHNNNSAINRHALRRTRRNGGDRSPFNPVIVLRGSGGSSESQENSNGGGGEGRGFELFYDDGGGSGLRPLPASMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDENHLDLESHCAVCKEAFEMGTSVREMPCKHIYHQDCILPWLTLHNSCPVCRHELPSDNPSNSSGSPSSSGHSVALTEDENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGTRGRQSGAFQRFFTSLFGCFSGRGSSSRSRTVDHSPHSRRTWSMDVNSGMRSW* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4182 385 CDD RING-H2_RNF126_like 207 248 - -
Amo13g4182 385 Pfam Ring finger domain 206 248 IPR001841 -
Amo13g4182 385 MobiDBLite consensus disorder prediction 94 131 - -
Amo13g4182 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 254 IPR013083 -
Amo13g4182 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 346 - -
Amo13g4182 385 Pfam Protein of unknown function (DUF1117) 278 371 IPR010543 -
Amo13g4182 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 346 - -
Amo13g4182 385 MobiDBLite consensus disorder prediction 354 385 - -
Amo13g4182 385 MobiDBLite consensus disorder prediction 111 125 - -
Amo13g4182 385 MobiDBLite consensus disorder prediction 252 271 - -
Amo13g4182 385 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Amo13g4182 385 SUPERFAMILY RING/U-box 187 254 - -
Amo13g4182 385 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Amo13g4182 385 SMART ring_2 207 247 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4182 Amo-Chr13 135482183 135484340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4182 146 261 C3H Transcription Factor Family AT5G01980 41.379 3.44e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4182 - K11982 gmx:100807324 549.28