Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4174 ATGGCATGGTTAATTAGACATCTTTTCTTCTCTTTCAAATTAAACCTCTCCTTCTCTGCTGCTTGTGTATGTGTTTCTATTATGGGGAACTGTTTTAGTGCCAGGATCAAAGCTGAGAGCCCTCCACGCAATGAAGAGAAGGATTTGAGTGGTATAAGCAGCAAGGTATCTTCTCGTTCCATGCTTATGTCTCCTCTGACAGAGGGCGAGATTCTGCTATCCACCAATTTAAAGAACTTCAGCTTCATTCAACTACGAACCGCCACAAGGAACTTTCGTCCGGATAGTGTGGTTGGTGAAGGTGGCTTTGGCTCTGTATTTAAGGGGTGGATCGACGAGCACACTCTTGAACCCACAAAACCCGGCACCGGACTCGTCATTGCCGTGAAGAGGCTAAATCAAGAGAGCACACAGGGACATACTGAATGGCTGACAGAAATCAACTACTTGGGTCAGCTGGATCATCCTAATCTTGTGAAACTCATAGGTTACAGCTTAGAAGATGATCACCGGATTTTGGTGTATGAGTTTTTGACTAAAGGCAGTTTAGATAACCATTTGTTTAGGAGAGCTTCTTATGTTCGCCCGCTTTCTTGGAACATACGCATGAATATAGCTCTTGATGCAGCTAAGGGCCTTGCATTTCTTCACAGCGACCAAGTAGATGTAATATACCGAGACTTGAAGACTTCTAACATCTTGCTTGATTCGAGCTATCATGCAAAACTGTCTGATTTTGGATTGGCAAAGGATGGACCAGTAGGTGACAAGAGCCATGTCTCTACCAGGATAATGGGAACATTTGGCTATGCTGCTCCTGAATACATAGCCACAGGTCATTTAACGAAGAAGAGTGATGTATACAGTTTTGGCGTTGTACTGCTGGAAATCATAGCAGGGAAACGCGCATTAGATAAGAACAGACCAACAGGGGAGCATAATTTGGTTGATTGGGCTAAGCCATTACTCGTCAGCAAAAGAAAAATCTCACAAGTCATGGATTCCCGTTTGGACAGTCAATATCCGTTGCGCGAAGCCATGAAAGTAGCACAACTCAAGGATTCTGAAGACACAACAACAAGTGGAGTGGAAAAATCTCCAGATCAAACAGTTAAAACGAATGGTAATAGTGCAAGATCTAGTAGAATTAGTTCAAAACAACATAGAAGAAGTAACAATGAATCTTTAAATGGAGAAGGTAGTTCTAATAATCAGACACCATCAGCTTCTCCTCTTCACACTTAG 1245 0.4265 MAWLIRHLFFSFKLNLSFSAACVCVSIMGNCFSARIKAESPPRNEEKDLSGISSKVSSRSMLMSPLTEGEILLSTNLKNFSFIQLRTATRNFRPDSVVGEGGFGSVFKGWIDEHTLEPTKPGTGLVIAVKRLNQESTQGHTEWLTEINYLGQLDHPNLVKLIGYSLEDDHRILVYEFLTKGSLDNHLFRRASYVRPLSWNIRMNIALDAAKGLAFLHSDQVDVIYRDLKTSNILLDSSYHAKLSDFGLAKDGPVGDKSHVSTRIMGTFGYAAPEYIATGHLTKKSDVYSFGVVLLEIIAGKRALDKNRPTGEHNLVDWAKPLLVSKRKISQVMDSRLDSQYPLREAMKVAQLKDSEDTTTSGVEKSPDQTVKTNGNSARSSRISSKQHRRSNNESLNGEGSSNNQTPSASPLHT* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4174 414 ProSitePatterns Protein kinases ATP-binding region signature. 98 130 IPR017441 GO:0005524
Amo13g4174 414 SMART serkin_6 92 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4174 414 MobiDBLite consensus disorder prediction 350 414 - -
Amo13g4174 414 MobiDBLite consensus disorder prediction 353 382 - -
Amo13g4174 414 SUPERFAMILY Protein kinase-like (PK-like) 64 316 IPR011009 -
Amo13g4174 414 Pfam Protein tyrosine and serine/threonine kinase 96 306 IPR001245 GO:0004672|GO:0006468
Amo13g4174 414 MobiDBLite consensus disorder prediction 394 414 - -
Amo13g4174 414 Gene3D Phosphorylase Kinase; domain 1 68 177 - -
Amo13g4174 414 PANTHER KINASE 1B 42 374 - -
Amo13g4174 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Amo13g4174 414 ProSiteProfiles Protein kinase domain profile. 92 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g4174 414 Gene3D Transferase(Phosphotransferase) domain 1 178 395 - -
Amo13g4174 414 PANTHER OS01G0588500 PROTEIN-RELATED 42 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4174 Amo-Chr13 135304372 135306187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4174 70 360 Glycoside Hydrolase AT3G07070 48.649 1.54e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo13g4174 PK_Tyr_Ser-Thr 6.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4174 - - gmx:106795104 531.176