Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4169 ATGACAACTGCCATGGATATGGTTAATAAGATTAATCCTGAGAAGGAAGCATGGAACCTCAAAGTTAGGGTGATTAGGCTTTGGACTGTTCCTACTTTCACTGGTCAGCTTCTCCCAAATTCCATGGAGATGATTTTGGTTGATGAATCTGGGTGCAAGATACAAGCTACTGTTCGGAAGACTATGATTTACAGGTTCAAACAACTTCTCTCTGAGGGTCGAGTATATGTAATGAAGCTCTTCTCTGTTGTGCCAAACCAAGGATCTTATAGGGCCACTAGGCATCAGTTTAAGTTGATTTTCCAATTCAGGACCACTGTCAGGGATGCTATCTGCGATTTTATTCCAAAATCTGCTCTTACAATCTCTCCATTCACTGAACTTTTGGAAACCAAAGAGGATTCTGATTTCTTAGTTGATGTTGTGGGTCTGTTGGTCTCTGTGTCGGAAGAGAAAGAATATGATAAAGATGGAAAGAAGATGAAGATGGCTGTGATGGAACTTGCTGAAAATGAGATTCGGTGTGTCTTATTTGGTGAATATGTTGATGAACTTAATCGATTTCTGTCTTCTGGGTATGCTGAACAGCCAAATGTTATGTTTGCATCAAAGCTTGGATTTAATCTTGACATCCCAGAGGTGGCAGCTTTTCGGAAAAGTTCTATTCCACATGGAGTTAGTGCATCCCAACCCATTGGCATTGTTGGATCTGGAAAAAATATCAGAATAGAAGAAGACTTTATGAAGCTCACACCTAGGTGTACTGTGAAGTCGCTTGATGATAACAACCGGGCTGGAACTTTTGTTGTACTAGCGAAGATAGCTGAAATAGTTGAGGATGGTCCTTGGTGGTACTCTGCTTGTGTGTGTGGCAGAGGTGTTCAAGCAGAATCTGGGATTTACTTTTGTCAATTTTGCAACATCCATGTTACAAATGTGACTCCTAGGCCAGTATTTATGTGCATCTTAAAAAAATTCAGGTTTAGAGTGAAGGTGTTGGTTGAGGATTCCACTGGTATTTCTATTTTTGTCCTCTTTGATCGTGAGGCAAGTTACCTACTGAATAAGACTTGTGCCCAGCTGTTTGAACAACATCTTAAGGATGTTGATGTTGTGTTTGGCACACAGTCTCCTCCTATATTCCAAGAAATTGTTGGAAAAACTATGCTGTTCAAGGTTCTTAGTAGGCCTGTTGGGATGGAGAAATTCAAAGGGACCTATCCAGTGAGGCGTGTTTGTGATGATGCTGCAATAGTTGGAATGTTTGAGCTCTCTGGTTCAGATTTGAGTCCTGAAAAGGTTGGGTTTGTACCAAAAGGAGAAGGATCATTTGGGGAACCCTCTAAGGAATCAAGTGTTGTTGACTTGGGAGCTGATGAAGATGCTAAGTGTCCTCTCCTCAAGAGAAAGTCTGCTGATGCTGTGGTGGATAAGTTAAATGAAGTGGATAGTTCTGAAAATTCATGTGATGAAGTTGATGAAAGTGAAGAGGAGTATGTGGTTGGCCTTAATCGAGGCTCTGTTGATGCTGAGAAAGATGTGAAGCCTTCGTTGAAGAGGTTGAGAAGATCTTTGAGGCTGCAATTTGATGAAGCTAATGAGTCTCGTGGCTCGGGGAATGATGGCTCCTCTGGACATGGGGTTAATTGA 1650 0.4152 MTTAMDMVNKINPEKEAWNLKVRVIRLWTVPTFTGQLLPNSMEMILVDESGCKIQATVRKTMIYRFKQLLSEGRVYVMKLFSVVPNQGSYRATRHQFKLIFQFRTTVRDAICDFIPKSALTISPFTELLETKEDSDFLVDVVGLLVSVSEEKEYDKDGKKMKMAVMELAENEIRCVLFGEYVDELNRFLSSGYAEQPNVMFASKLGFNLDIPEVAAFRKSSIPHGVSASQPIGIVGSGKNIRIEEDFMKLTPRCTVKSLDDNNRAGTFVVLAKIAEIVEDGPWWYSACVCGRGVQAESGIYFCQFCNIHVTNVTPRPVFMCILKKFRFRVKVLVEDSTGISIFVLFDREASYLLNKTCAQLFEQHLKDVDVVFGTQSPPIFQEIVGKTMLFKVLSRPVGMEKFKGTYPVRRVCDDAAIVGMFELSGSDLSPEKVGFVPKGEGSFGEPSKESSVVDLGADEDAKCPLLKRKSADAVVDKLNEVDSSENSCDEVDESEEEYVVGLNRGSVDAEKDVKPSLKRLRRSLRLQFDEANESRGSGNDGSSGHGVN* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4169 549 MobiDBLite consensus disorder prediction 529 549 - -
Amo13g4169 549 PANTHER REPLICATION FACTOR A 1, RFA1 22 362 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo13g4169 549 SUPERFAMILY Nucleic acid-binding proteins 8 107 IPR012340 -
Amo13g4169 549 Gene3D - 115 226 IPR012340 -
Amo13g4169 549 Gene3D - 239 419 IPR012340 -
Amo13g4169 549 SUPERFAMILY Nucleic acid-binding proteins 253 396 IPR012340 -
Amo13g4169 549 Pfam Domain of unknown function DUF223 43 132 IPR003871 -
Amo13g4169 549 Gene3D - 6 110 IPR012340 -
Amo13g4169 549 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 362 - -
Amo13g4169 549 MobiDBLite consensus disorder prediction 531 549 - -
Amo13g4169 549 CDD RPA1_DBD_C 268 412 IPR013955 -
Amo13g4169 549 CDD RPA1_DBD_A_like 20 107 - -
Amo13g4169 549 CDD RPA1_DBD_B_like 140 220 - -
Amo13g4169 549 SUPERFAMILY Nucleic acid-binding proteins 124 220 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4169 Amo-Chr13 135266131 135269289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4169 1 361 Core DNA Replication Machinery Family AT5G08020 22.693 6.77e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g4169 - - aip:107607298 675.241